BAC Information

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BAC

Clone NameMSMg01-380K19
Chromosome10 (Build37)
Map Location 115,788,936 - 115,943,387
singlet/doubletdoublet
Overlap genePtprb, Kcnmb4, Cnot2
Upstream geneTmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik
Downstream geneLOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380K19.T7 (MSMg01no380_k19.b1)MSMg01-380K19.TJ (MSMg01no380_k19.g1)
ACCAG484994AG484995
length742741
length of high quality
(start - end)		534 (63 - 596)512 (68 - 579)
definitionCHROMAT_FILE: MSMg01no380_k19.b1 PHD_FILE: MSMg01no380_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:49 2005CHROMAT_FILE: MSMg01no380_k19.g1 PHD_FILE: MSMg01no380_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,942,854 - 115,943,387)(115,788,936 - 115,789,444)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTAGCATGACAAATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGA
AGCTCGCCAAGCATAATATGTATGCCAAAGCAACAGCCTTCTCGACAGCC
TTTTACTGTGAACAGGTAAGATGTTTACTGATACTGCATATAATTGTCTT
TTGGGGTATCCTCAGGTTTGCCCTTTCATGTGCAACGCTTTGTTTTTGAG
CTGTGGCTTCTGTCTCATAGGTGTGTTTTAATTGTATATTTGTGAACAGA
GTTGTTACCTATCATAATTCTTAACGCTCTGAAGACTCAGAACATATTCT
CTTAGAAAAGATGGTTTTATTTTACATAACACGTTAAATCTTTTTTTTGA
TGTGGTATTAGAAAGGAAATGTTCTTGGGTTGTCACCAGGCAAATTTTTT
ATTGATTTATTCTTTTATTATTAAGTAGAGTTTATCCATTGTGTGATTCT
AAGAGTTCTAGGTTATGAGTATGACTGGAGGAGAGCATGCTGCGTTATCG
CTGCCATGCTTCAGGCAGGCACGATCTGGATGCCCGCTGAGCTACGGAAA
ATCTTTCACAATTGCATGCAGAGTATCTCANAACAGTGCTCCTCTAAATT
TTATGTCTAGAGATTAAAAACAAACTATCCAAAAAATAAGCTAGTGTTTT
TCCTTCCATTTTGCACTGTACAAATAATATCAGTGTATCTCT

ACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTATGTAATTCTGTAGAAAGTGCAGGGGTGAC
CCAGTTTCCACAGACTGGACAAATGCCATGCAAGAACTGTCACATCATTG
TACACAACTGAATTATGACCTTTGGTGTTTATTATCGACACATTCCGTTA
AGGCACCTGCAGGAGGTGTTGCTTTGGAGTTAAATGTATTCATGTACATG
CTGCTAAGGTTTTAAGTGTTAAGTCTCTGAAAGGGATGTCAGGGCGCACA
GGAATATCAGTCTATTTCATCTTCCTATCGGTCTATTTCATCTTCCTTAT
ATTTCTCAGAATTATTTAAGGTGCTATTTGTACATGAATTTCCCTCAGCA
TCTCTGACAAATTTTGAGCCATTTGTGGATAAAGGAGGATTTTTAAACCT
GGTGAACACTGGACCGATTTCTAGACTAAATGACATTTTAGTTTCAGTGG
GTATTTAACAGTCTGTATGGTTTTACATCCTATTTAGTTGTACTAAATTG
GTTATGCATAATTAATTAAATAATTTTCAGGGTCAATGATGCATTCCAGG
TTTCCTCACACCCTGAAACTGGAGATAGATTTGGGAGCCATGAATAGACT
TTTATTAAGCACCAATGGAGAAAGTGTGTTTTCCCATGAGTCCAGGTCAG
AGACCAAAAACTCCCCCCGTTAGAAAAACTGGTCCTGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_k19.b1 MSMg01no380_k19.b1 CHROMAT_FILE:
MSMg01no380_k19.b1 PHD_FILE: MSMg01no380_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:49 2005
         (534 letters)



>mm_chr10_115942654_115943587
          Length = 934

 Score = 1009 bits (522), Expect = 0.0
 Identities = 531/534 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagcatgagcagttcagggttaggtagccccaacagaagctcgccaagcataatatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atagcatgagcagttcagggttaggtagccccaacagaagctcgccaagcataatatgta 675

                                                                       
Query: 61  tgccaaagcaacagccttctcgacagccttttactgtgaacaggtaagatgtttactgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgccaaagcaacagccttctcgacagccttttactgtgaacaggtaagatgtttactgat 615

                                                                       
Query: 121 actgcatataattgtcttttggggtatcctcaggtttgccctttcatgtgcaacgctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 actgcatataattgtcttttggggtatcctcaggtttgccctttcatgtgcaacgctttg 555

                                                                       
Query: 181 tttttgagctgtggcttctgtctcataggtgtgttttaattgtatatttgtgaacagagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tttttgagctgtggcttctgtctcataggtgtgttttaattgtatatttgtgaacagagt 495

                                                                       
Query: 241 tgttacctatcataattcttaacgctctgaagactcagaacatattctcttagaaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgttacctatcataattcttaacgctctgaagactcagaacatattctcttagaaaagat 435

                                                                       
Query: 301 ggttttattttacataacacgttaaatcttttttttgatgtggtattagaaaggaaatgt 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 434 ggttttattttacataacacgttaaatctttttgttgatgtggtattagaaaggaaatgt 375

                                                                       
Query: 361 tcttgggttgtcaccaggcaaattttttattgatttattcttttattattaagtagagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcttgggttgtcaccaggcaaattttttattgatttattcttttattattaagtagagtt 315

                                                                       
Query: 421 tatccattgtgtgattctaagagttctaggttatgagtatgactggaggagagcatgctg 480
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 314 tatccattgtgtgattctaagagttctgggttaggagtatgactggaggagagcatgctg 255

                                                                 
Query: 481 cgttatcgctgccatgcttcaggcaggcacgatctggatgcccgctgagctacg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cgttatcgctgccatgcttcaggcaggcacgatctggatgcccgctgagctacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no380_k19.g1 MSMg01no380_k19.g1 CHROMAT_FILE:
MSMg01no380_k19.g1 PHD_FILE: MSMg01no380_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:49 2005
         (512 letters)



>mm_chr10_115788736_115789647
          Length = 912

 Score =  946 bits (489), Expect = 0.0
 Identities = 504/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatgtaattctgtagaaagtgcaggggtgacccagtttccacagactggacaaatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatgtaattctgtagaaagtgcaggggtgacccagtttccacagactggacaaatgcc 260

                                                                       
Query: 61  atgcaagaactgtcacatcattgtacacaactgaattatgacctttggtgtttattatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcaagaactgtcacatcattgtacacaactgaattatgacctttggtgtttattatcg 320

                                                                       
Query: 121 acacattccgttaaggcacctgcaggaggtgttgctttggagttaaatgtattcatgtac 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacattctgttaaggcacctgcaggaggtgttgctttggagttaaatgtattcatgtac 380

                                                                       
Query: 181 atgctgctaaggttttaagtgttaagtctctgaaagggatgtcagggcgcacaggaatat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 atgctgctaaggttttaagtgttaagtctctaaaagggatgtcagggcgcacaggaatat 440

                                                                       
Query: 241 cagtctatttcatcttcctatcggtctatttcatcttccttatatttctcagaattattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtctatttcatcttcctatcggtctatttcatcttccttatatttctcagaattattt 500

                                                                       
Query: 301 aaggtgctatttgtacatgaatttccctcagcatctctgacaaattttgagccatttgtg 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggtgctatttgtacgtgaatttccctcagcatctctgacaaattttgagccatttgtg 560

                                                                       
Query: 361 gataaaggaggatttttaaacctggtgaacactggaccgatttctagactaaatgacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gataaaggaggatttttaaacctggtgaacactggaccgatttctagactaaatgacatt 620

                                                                       
Query: 421 ttagtttcagtgggtatttaacagtctgtatggttttacatcctatttagttgtactaaa 480
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 ttagtttcagtgggtatttgacagtctgtatggctttacatcctatttagttgtactaaa 680

                                        
Query: 481 ttggttatgcataattaattaaataattt 509
           |||||||||||||||||||||||||||||
Sbjct: 681 ttggttatgcataattaattaaataattt 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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