BAC Information

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BAC

Clone NameMSMg01-380L03
Chromosome10 (Build37)
Map Location 103,513,535 - 103,513,997
singlet/doubletsinglet
Overlap genenone
Upstream geneLrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380L03.T7 (MSMg01no380_l03.b1)MSMg01-380L03.TJ (MSMg01no380_l03.g1)
ACCAG485010AG485011
length755771
length of high quality
(start - end)
472 (36 - 507)456 (66 - 521)
definitionCHROMAT_FILE: MSMg01no380_l03.b1 PHD_FILE: MSMg01no380_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:50 2005CHROMAT_FILE: MSMg01no380_l03.g1 PHD_FILE: MSMg01no380_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCGCGGAATTCTAATT
TAGATCTTCACTAATTATTGCTTCTGTTGTTTAGATATCTATAGGTATAA
TTAAATTATCTTCACCAGCTTGTGCGATAATTGACATTTACTGTTCTGCT
TATTGTGGGTTTGTTTGCTTTTGCTTCATTAGTTTCCTGAAGTAGAAGCT
AAGGTTATCAATTTATCTGTTTCAACACTTTAACACATACATTTAATGCT
ATGATTATTCTCCAGTAAGTACCATTGTTATATCTCATGAATATTGACAT
TTTATTTGTTTCAAAATATTTTTGTTCAATTAGTGAGGCTTTGGATATGA
GTAATACATTGTTTACATATATGCTTTTTAATTTACAAAGACTTTCAGAT
GTCTTCATTATTTGCTGTTTGTTTTCAAGTATAACCATCCCATGTTCCAG
AAAAGAAGCCATACTATATAAGTGTCTCTTTTTTTTTTTTTTTTTTTTTT
TTTCGGGCAAGGAAGACATTATAAACAGGTATGCATTTTTCTGGGAAATA
TATCTACCTCTAAGAAGAACATATCCATAGAGTACATCTTTTAAGAAGTT
ATTTAGGTAAGAATGGAGAGATAGGCCACTGGTTAAGAACTGTATTGCTC
TTTAAGGGAACTGGTAGTTGATTTGGGAACCACACTTGGCTTGAAACTCC
CCTCTGTTGGAAACCCATGTGCTCCTCTCGGCCCCCCTGGTCCCCTCCTT
ATCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCCAATGGCTGAGAAGCACCT
GAAAGAATGCTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCATCTCACTCCAGTCAGAATATCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCAAGGATGTGGAGAACGAGGAACACTTCTCCA
TTTTTGGTGGGATTGCAAACTTGTACAACTACTCTGGAAATCAGTCTGGC
GGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCT
CTCCTGGGCACATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATG
CTCCACTATGTTTACAGCAGCCTTATTTATAGTAGCCAGAAGCTGGAAAG
AACCCAGATGTCTCTCAACAGAGGAATGGATACAAAAAATGTGGTACATT
TACACAATGGAGTACTACTCAGCTATTTAAAAGAATGAATTTATGAAATT
CCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGCAACAC
AATCACAAAAGAACTCCAATGATATGTACTCCCTGATAAGTGGAAATTAC
CCCCCAAACTTAATATACCCCAAGATATAAGATATCATTTGGAAAACACC
TGAAATTGGAAAAAATAAATTTCCTCTATTGGGGCAACTTTTTCTCCTTC
TTATAAATGGGAACCATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_l03.b1 MSMg01no380_l03.b1 CHROMAT_FILE:
MSMg01no380_l03.b1 PHD_FILE: MSMg01no380_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:50 2005
         (472 letters)



>mm_chr10_103513331_103514202
          Length = 872

 Score =  859 bits (444), Expect = 0.0
 Identities = 459/464 (98%), Gaps = 1/464 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaatttagatcttcactaattattgcttctgttgtttagatatctataggtata 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaatttagaacttcactaattattgcttctgttgtttagatatctataggtata 264

                                                                       
Query: 65  attaaattatcttcaccagcttgtgcgataattgacatttactgttctgcttattgtggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaaattatcttcaccagcttgtgcgataattgacatttactgttctgcttattgtggg 324

                                                                       
Query: 125 tttgtttgcttttgcttcattagtttcctgaagtagaagctaaggttatcaatttatctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgtttgcttttgcttcattagtttcctgaagtagaagctaaggttatcaatttatctg 384

                                                                       
Query: 185 tttcaacactttaacacatacatttaatgctatgattattctccagtaagtaccattgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcaacactttaacacatacatttaatgctatgattattctccagtaagtaccattgtt 444

                                                                       
Query: 245 atatctcatgaatattgacattttatttgtttcaaaatatttttgttcaattagtgaggc 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 atatctcatgaatattgacattttgtttgtttcaaaatatttttgttcaattagtgaggc 504

                                                                       
Query: 305 tttggatatgagtaatacattgtttacatatatgctttttaatttacaaagactttcaga 364
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttaaatatgagtaatacattgtttacatatatgctttttaatttacaaagactttcaga 564

                                                                       
Query: 365 tgtcttcattatttgctgtttgttttcaagtataaccatcccatgttccagaaaagaagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtcttcattatttgctgtttgttttcaagtataaccatcccatgttccagaaaagaagc 624

                                                       
Query: 425 catactatataagtgtctcttttttttttttttttttttttttt 468
           |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 catactatataagtgtct-ttttttttttttttttttttttttt 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)