BAC Information

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BAC

Clone NameMSMg01-380P04
Chromosome10 (Build37)
Map Location 47,781,169 - 47,781,515
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252, LOC100042387, LOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380P04.T7 (MSMg01no380_p04.b1)MSMg01-380P04.TJ (MSMg01no380_p04.g1)
ACCAG485204AG485205
length7651,348
length of high quality
(start - end)
350 (60 - 409)---
definitionCHROMAT_FILE: MSMg01no380_p04.b1 PHD_FILE: MSMg01no380_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:10 2005CHROMAT_FILE: MSMg01no380_p04.g1 PHD_FILE: MSMg01no380_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCCACATCA
ATACCGTATGAAATACAGCTTCAAAGTAGCAACAAAACCTTGCCTAGTTT
AAGGTTCAAAATTACTACTTTGACAGTAGTGTATCTAAGAATATTATTCA
TATGGTGCAGGGTTTGATAAATGTTAAATAATATTTAAACATTAATAAAG
TGAAACTGTAATTCAATAAAAAGTGATTGTCATTTTGTGCCTTTGCTTTG
ATTCTGTTTGGGGACATAACAGAGGTGAGGAAACTAATTAGTGGACAGTT
TTCATGTTCTGTTTTTCCATTAATCTTTCTAAGTATGTAATAAGAACTCA
GATTACTCAATCACAAGTATAAAAGAGGTAATCTAAATAACTACCAAAAT
GTCATTCTGTGATCAAGGGTAAGATTATGTATATTTTTAGTTACTGCTAA
TTTGAGGATGTTTAACTATGTTCTCTTTAGTAATTAACAGCCACATACAA
CTATAAGTGACTGCATTTCTGACTCCTTCATGGGAATATGACAGATATTA
TCTATAACTAGAAAATTAGTATTCTAGCTTTATAAAGTGTTACACTCACC
ATAACACATTCCATAACATTTCCCTCAGAATCACTGTTTGGTTGATACTA
TTAATCCTACNCCTTAATACTAAACCAAACCACCTATTTTTATGCACATT
TTTAGGCATATTTTGATTCCCAAATAACTTTAAAGGAAGCCTTATATAAC
ACAAACATATTTCCC
CCATCCCCCTCCGCGACCTTACTGCTCATGTTTACCTCCTATTGCTCAGC
TNAGCGCGTACAGAAAGAGANAGATTACTGATAATTATAGTAAATTCTCT
GTAGATCAAAATTAACTATAGTCGCATACTCGGTTCATAACGAGTCTATA
CTACACTCCGATATACGTCACACATTATTATTATATCTTAATCACTNTNA
TANTATGACACGTGTCTTATCGTGTTTTCGTCTATCATGTGATGTACATC
GGTGTGGCTTGCTATGTCTGTTTTATTGAAGTATTAGACCCGATCGCTCT
ATCATTCGCGGCCGTCCATAGAGAGATATGCGACGATGCCGAAGCTATCT
CTACTCCCCCTGTGCGAGTCCGACTCGCGCTCAGGATATAGTTGCGCATG
TGTAGGTGTTTAATGATAGTTACTGAGAGGAGATCGAAGACCAGAGGAGA
CTGGTGACTGATCCCGAGACCACAGAATAACTAACACATACAGAGAGACC
GAACGGGACGCCAGGCGACGAGAGGCGCAGCATATCGCACGCGTGAACGA
GAGCGCGAGTAGGAACATGAGAACAGAGGATAGTATTATGATCGAGACGA
CCCACGCTCGCATTGCACTATGATTATATTGAATGCTATGCGTCCTCTAT
CTCGCGCAGCGTGTACACATAGTCATATCGTTGGTATTCCGCCGTCAGAT
CATTATATCCGGCACTACTCAGCTCAACGCATTGATATTACTAACCGCGA
AGAGATATCTGGTGAAGCCTGGCTATGACATTATGACATAATCATATATC
TAGATCCGGACTGTCACTCTCACTGCGCTAACGTATAATACATCTAGAGC
CGAGCACCGATGATATATGAGAATACTTGTCTTTAGATATNGGCAGAATA
TCGCGCTATCGTAGTAAACCGGAGTACTAGGATTAGTAGACTCTAGAATG
TGTATATAAATAATAATTCATCGCTGCGCATACACACGTAAATTATCAGA
TTACTCCTTATATGGATATGTGCGGAGTGAGAGCAGTGCGCATGCGACTG
CCGTACTTATATTATATCGTACATCTTGTATTATCNCAACCCCCATCACC
TCACGATATCGTATACAGAAGAATCACAATAAGATTGATACAGCAACGGA
ACATTCTAATGATGAGCAGAAAGAATTTCTTACTCTCCGATAATACCCGA
CTATTAGTCTAATACGAACTAGATAGTACGCGTCTAGTGACTTTGCTCAC
ACCTGATGCCCGACTATTGCGCACAGCTGCAGATATCTGATATATATCGC
CTATGATGCGACCGCCGTCGCCACAGGTCACACTGCGCNCGACTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_p04.b1 MSMg01no380_p04.b1 CHROMAT_FILE:
MSMg01no380_p04.b1 PHD_FILE: MSMg01no380_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:10 2005
         (350 letters)



>mm_chr10_47780965_47781715
          Length = 751

 Score =  424 bits (219), Expect = e-123
 Identities = 318/351 (90%), Gaps = 9/351 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   tacagcttcaaagtagcaacaaa-accttgcctagt-ttaagg-ttcaaaattactactt 61
           ||||||||| ||| ||| |||||  ||||||||| | |||||| || |||||||||||||
Sbjct: 551 tacagcttcgaagcagc-acaaagtccttgccta-tattaaggctt-aaaattactactt 495

                                                                       
Query: 62  tgacagtagtgtatctaagaatattattcatatggtgcagggtttgataaatgttaaata 121
           |||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct: 494 tgacagtagtatatctaagaatattatgcatatggtggagggtttcataaatgttaaata 435

                                                                       
Query: 122 atatttaaacattaataaagtgaaactgtaattcaataaaaagtgattgtcattttgtgc 181
           | |||||||| |||||| |||||||||||||| |||| ||||| |||||||||| |||||
Sbjct: 434 acatttaaaccttaatatagtgaaactgtaatgcaatgaaaagcgattgtcattgtgtgc 375

                                                                       
Query: 182 ctttgctttgattctgtttggggacataacagaggtgaggaaactaattagtggacagtt 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 374 ctttgctttgattctgtttggggacataacagaggtgaggaaactaattagtggatggtt 315

                                                                       
Query: 242 tt-catgttctgtttttccattaatctttctaagtatgtaataaga-actcagattactc 299
           || ||||| |||  |||||||||||||||||||||||||| ||| | ||||||| |||||
Sbjct: 314 tttcatgtactgggtttccattaatctttctaagtatgtattaa-acactcagagtactc 256

                                                              
Query: 300 aatcacaagtataaaagaggtaatctaaataactaccaaaatgtcattctg 350
           |||||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 255 aatcactagtataagagaggtagtctaaataactaccaaaatgtcattctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 751
Length adjustment: 9
Effective length of query: 341
Effective length of database: 742
Effective search space:   253022
Effective search space used:   253022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)