Query= MSMg01no381_g01.b1 MSMg01no381_g01.b1 CHROMAT_FILE:
MSMg01no381_g01.b1 PHD_FILE: MSMg01no381_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:46 2005
(474 letters)
>mm_chr10_116350745_116351619
Length = 875
Score = 849 bits (439), Expect = 0.0
Identities = 463/471 (98%), Gaps = 1/471 (0%)
Strand = Plus / Plus
Query: 5 gaattctct-aattacccacacacctttctttacctaatagacctcagctttgtctgggg 63
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaaataaaccacacacctttctttacctaatagacctcagctttgtctgggg 264
Query: 64 ggagggataattttaactttgaaatacaaagttaaagacaaacaccgcatgtcattcaaa 123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggagggataagtttaactttgaaatacaaagttaaagacaaacaccgcatgtcattcaaa 324
Query: 124 ccacagacaagaacaaacacaagggcacagcacagagactctgaagagcgcgctcttccc 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacagacaagaacaaacacaagagcacagcacagagactctgaagagcgcgctcttccc 384
Query: 184 acagggcgtggtgaaaacacctactttggccctccgcactcgacagcggaagccttcacg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acagggcgtggtgaaaacacctactttggccctccgcactcgacagcggaagccttcacg 444
Query: 244 aagcggatgggctgcaaccccactggttcgatgcttagagtgttgttctccacagcctcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcggatgggctgcaaccccactggttcgatgcttagagtgttgttctccacagcctcc 504
Query: 304 agaacagctgaagccaacttaaaacaaaacagagttaaatgtcagcagaaaaataccaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaacagctgaagccaacttaaaacaaaacagagttaaatgtcagcagaaaaataccaaa 564
Query: 364 ataaaatacgacattaattttacaagctggtcctccctcagcttcactaacttggccgta 423
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 ataaaatacgacattaattttacaagctggtcctccctctgcttcactaacttggccgta 624
Query: 424 gccactgcaaagagagggaagaaaagcacaaagcacaaccgcgatttaacc 474
||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 625 gccactgcaaagagaaggaagaaaagcataaagcacaaccgcgatttaacc 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 875
Length adjustment: 10
Effective length of query: 464
Effective length of database: 865
Effective search space: 401360
Effective search space used: 401360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_g01.g1 MSMg01no381_g01.g1 CHROMAT_FILE:
MSMg01no381_g01.g1 PHD_FILE: MSMg01no381_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:46 2005
(444 letters)
>mm_chr10_116515417_116516261
Length = 845
Score = 820 bits (424), Expect = 0.0
Identities = 440/446 (98%), Gaps = 3/446 (0%)
Strand = Plus / Minus
Query: 1 tcagcagtgctttttgtctaaaaggtcgtgaatgttaagctgctctcatctccttctagg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tcagcagtgcttcttgtctaaaaggtcgtgaatgttaagctgctctcatctccttctagg 586
Query: 61 tcattaatgtggatgatgatgggaatgagctaggctctggtgtgatggaactcacagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tcattaatgtggatgatgatgggaatgagctaggctctggtgtgatggaactcacagaca 526
Query: 121 cagagctgattctgtacacccggaaacgggactcggtaaaatggcactacctctgcctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cagagctgattctgtacacccggaaacgggactcggtaaaatggcactacctctgcctac 466
Query: 181 gacgatacggctatgactcaaatctgttttcttttgaaagtggtcgaaggtgtcagactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gacgatacggctatgactcaaatctgttttcttttgaaagtggtcgaaggtgtcagactg 406
Query: 241 gacaaggtagggagagcctttcttttctccagatgatagtgtttggaagcattgcacttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gacaaggtagggagagcctttcttttctccagatgatagtgtttggaagcattgcacttc 346
Query: 301 cagttactctgaatacaacatggcatggagacacaggcttggcccaccgagccctcg--g 358
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 345 cagttactctgaatacaacatggcatggagacacaggcttgg-ccaccgagccctcggtg 287
Query: 359 gaggtagacataagttatggattcatttaccaagcatgcacgaaacactgtgcccttgat 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 286 gaggtagacataagttatggattcatttaccaagcatgcacgagacactgtgcccttgat 227
Query: 419 agaaataaagtgctaactgtctatgt 444
|||||||||||| |||||||||||||
Sbjct: 226 agaaataaagtgttaactgtctatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space: 362390
Effective search space used: 362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
