BAC Information

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BAC

Clone NameMSMg01-381P23
Chromosome10 (Build37)
Map Location 114,328,744 - 114,328,878
singlet/doubletsinglet
Overlap genenone
Upstream geneTrhde, 4930473D10Rik
Downstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381P23.T7 (MSMg01no381_p23.b1)MSMg01-381P23.TJ (MSMg01no381_p23.g1)
ACCAG486005AG486006
length759800
length of high quality
(start - end)
423 (35 - 457)135 (93 - 227)
definitionCHROMAT_FILE: MSMg01no381_p23.b1 PHD_FILE: MSMg01no381_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:35 2005CHROMAT_FILE: MSMg01no381_p23.g1 PHD_FILE: MSMg01no381_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
CAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATT
TGACCTTAGTACAAGGAGATAAGTATGGATCGATTCCCATTCTTCTACAT
GATAACAACCAGCTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATTAGTGACCATATGTGTG
TGGGTTTCTTTTCTGGGGCTTTAATTCTATTCCATTGGGTCAACTTGCCG
GTCCTAACCCCGAACCCGGCCGTTTTTTCCCCCTTTGCCCTTTTATAAAC
TTTTTTTTTCCTTTGTTTGTTTCTCCCAACCCCCTTTTTTTTCGCCAAAA
ATCTTTGCTTTTTAAGATTTTTTTTTTCCCCACGATATCCCCCCTTTTTC
TCTCTTTTT
TACCGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTGTTCACAGGGGTAACACTAACATTTCAC
CAGAATAATTATGACTCTGTTTTTGTGTTGAGGCTTTACTTTCATAATCA
CGTTCATAAATATTGAATTCTTACTATATATTAAAATGGCTGTCCTTCCT
TTTTTCCTCCGTATATCAATACTTGGCGTCTTACATTGACCCACTGACTA
AATTATGTATCCCAAAATCACACTCACCCAATCATCATCCTGACTTCATA
TTGACTCTCGGTTCTACCTCTTCATAATGACCAGGCATAACAACATGTCT
TACTGAGTTGTCTTGTCAGTTTACCGCAAATATCCCCCTTCCCTGTTTTT
TATTACCCAATCTCTCTCTCTCTCTCTCTTTTCTTTCTCTACTATACGTT
CCACTTTTTTCTTTGCCCTTCTTGATTTTTCCCTTTCCTTTCTTACCCCT
TTACTACCTGTCTTTCCTTTTCTCCTACCCCTTCCGTCCCTCCGTTTATC
TTTCTTCATTTATCTCCCATACCCCTTTCTTACACCCCCTTTTCGTTTAA
CTCTTTTATTTCTCCTTTTTATTTACCTTCCCCCCCCCCTTTTCTTATTT
CCACCTTTATTCACTTTTTCTCCCTTCCCTCCCTCTTTATTTTATTCCCT
TTCCACTCACCCTATACTATTCTCTCTTCTTTATTATATTAATATCACTA
TATTACCCCCTCTATTCTTCATTCTTTTCTCGCTTTCCTCTTCCTTCTCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_p23.g1 MSMg01no381_p23.g1 CHROMAT_FILE:
MSMg01no381_p23.g1 PHD_FILE: MSMg01no381_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:35 2005
         (135 letters)



>mm_chr10_114328544_114329079
          Length = 536

 Score =  238 bits (123), Expect = 1e-67
 Identities = 132/135 (97%), Gaps = 1/135 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttcaccagaataattatgactctgtttttgtgttgaggctttactttcataatcacg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 catttcaccagaataattatgactctgtttttgtgttgaggttttactttcataatcacg 260

                                                                       
Query: 61  ttcataaatattgaattcttactatatattaaaatggctgtccttcctttttt-cctccg 119
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 261 ttcataaatattgaattcttactatatattaaaatgactgtccttcctttttttcctccg 320

                          
Query: 120 tatatcaatacttgg 134
           |||||||||||||||
Sbjct: 321 tatatcaatacttgg 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 536
Length adjustment: 8
Effective length of query: 127
Effective length of database: 528
Effective search space:    67056
Effective search space used:    67056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)