BAC Information

Click to search

BAC

Clone NameMSMg01-382C10
Chromosome10 (Build37)
Map Location 88,315,684 - 88,316,108
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20
Downstream geneSlc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382C10.T7 (MSMg01no382_c10.b1)MSMg01-382C10.TJ (MSMg01no382_c10.g1)
ACCAG486123AG486124
length753778
length of high quality
(start - end)		433 (44 - 476)550 (76 - 625)
definitionCHROMAT_FILE: MSMg01no382_c10.b1 PHD_FILE: MSMg01no382_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:48 2005CHROMAT_FILE: MSMg01no382_c10.g1 PHD_FILE: MSMg01no382_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATACGACTCACTATTTGCAGXXXXXXXXXXXXXXXXXXXXXGAGTTCC
GAGGCAATTATCTTGTCCCTGGCTTTGGAGTTTTACCACAGCAGTCCCAG
CCCTGAGCTCCAAGGCAAAGTCCTCTGTTTTCTTCTGTACCTTGTTCTTG
AGAAAGTAGGCCACACTCCTACCCTACTGCTGATTCAAGGAATGGCAGAA
GCAGGCATTGGACACGTGGCTAATGCATTCAGTAGTTCATGCTGTGGGTA
ATGGCCCAGGAGAAGGGGTCATGGAATTTAGCTTGGTCCCTGATTTCACT
GAAGATATGCAATGGGTTCAAGTCTAATCTTGGACATAATTTGTTCTACC
TCCTCAAGTGAGTGGTATTTCTCTTCATGCTGCCTCGAGTCAGGGAAGAA
GTGAGTCAACAAATCCTTCCTGCCATCTTTTGTGGTTATATTATTATTGT
TGTTGTTGTTATTGTTGGTTTTTNNNTNNNNNTTNTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
NNTTTTTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTNNTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTTTTTTTTTTATTTTTTTTTTTTTTTNNTTTTT
TTT

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTAAACCTAAGTGGAAGGATTTGA
TAGAGACATCCTTTTCAGGATTGAGTACTCTAAAGTCTCTCACTCTACAC
GTTGTCCAGTTGTGGGTCTCTGTATTTGTTTGTTCCCATCTTCTGAAGGA
GGACGCTTCTCTGACGGTGGTTGAGCAAGACCACATATAAGTAAAACAGA
ATGCAGTTAAGAGTCCTTCATTGTATTGCTATGTTTCTTCATTACTTGGT
TTTCCCCTAAGCCCCTGGCCTAGCTAGTTTCAGGCTTGTGGCCACTGAGC
AATGTCAGGCATTCAGGGTTCCAGCTCATGGAGTGGACCTTACATCTAAT
CGGATAGTCATTGGTTGCTCCCACAATCTTTATGCCACCAGTGCACCAGC
ATATCTTGCAGGCAGGTCACCATTGTGGATCAGAGGGTTTGGTAGCAGAG
CTGATGTTAATCTTTCTCCTCTTCAGTATGCAGAATACCTTCCAATGCCA
TGAACACTAGTAAGGAAGACTGAAGGCTCTGTGTAGGCAACTGCTCAACT
TCTTTTTTTTCAATGAGTTATACAGGTGTTGTCTTCAACAGTAGGGCCTA
CAAAATAAAAATGAAATTAGATGTTTTAAATGCTCTTTCCTTCTTTCTTT
CCTTCCTTCCTTTCTTTCTTTCTTTTCTTTCGTACTTTCTTTCTTTCTTT
TCTTTCAAAAACCTCTTTTCTTTGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_c10.b1 MSMg01no382_c10.b1 CHROMAT_FILE:
MSMg01no382_c10.b1 PHD_FILE: MSMg01no382_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:48 2005
         (433 letters)



>mm_chr10_88315511_88316344
          Length = 834

 Score =  783 bits (405), Expect = 0.0
 Identities = 420/425 (98%), Gaps = 2/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaggcaattatcttgtccctggctttggagttttaccacagcagtcccagccctgagctc 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaggcaattatcttgtccctggctttggagttttaccacagcagtcccagccctgagctc 539

                                                                       
Query: 68  caaggcaaagtcctctgttttcttctgtaccttgttcttgagaaagtaggccacactcct 127
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 538 caaggcaaagtcctctgttttcttctgtaccttgttcttgagaaagtaggacacactcct 479

                                                                       
Query: 128 accctactgctgattcaaggaatggcagaagcaggcattggacacgtggctaatgca-tt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 478 accctactgctgattcaaggaatggcagaagcaggcattggacacgtggctaatgcattt 419

                                                                       
Query: 187 cagtagttcatgctgtgggtaatggcccaggagaaggggtcatggaatttagcttggtcc 246
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 418 cagtagttcatgctgtgggtaatggcccaggcgaaggggtcatggaatttagcttggtcc 359

                                                                       
Query: 247 ctgatttcactgaagatatgcaatgggttcaagtctaatcttggacataatttgttctac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctgatttcactgaagatatgcaatgggttcaagtctaatcttggacataatttgttctac 299

                                                                       
Query: 307 ctcctcaagtgagtggtatttctcttcatgctgcctcgagtcagggaagaagtgagtcaa 366
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctcctcaagtgaatggtatttctcttcatgctgcctcgagtcagggaagaagtgagtcaa 239

                                                                       
Query: 367 caaatccttcctgccatcttttgtggttatattattattgttgttgttgttattgtt-gg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 238 caaatccttcctgccatcttttgtggttatattattattgttgttgttgttattgtttgg 179

                
Query: 426 ttttt 430
           |||||
Sbjct: 178 ttttt 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space:   349800
Effective search space used:   349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |