BAC Information

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BAC

Clone NameMSMg01-382L03
Chromosome10 (Build37)
Map Location 122,079,580 - 122,080,024
singlet/doubletsinglet
Overlap genenone
Upstream geneD930020B18Rik, BC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
Downstream genePpm1h, D630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382L03.T7 (MSMg01no382_l03.b1)MSMg01-382L03.TJ (MSMg01no382_l03.g1)
ACCAG486539AG486540
length746738
length of high quality
(start - end)
448 (33 - 480)79 (61 - 139)
definitionCHROMAT_FILE: MSMg01no382_l03.b1 PHD_FILE: MSMg01no382_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:31 2005CHROMAT_FILE: MSMg01no382_l03.g1 PHD_FILE: MSMg01no382_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACACCCTG
TGGAAAGTTCCTTTCATGTGCTCCACTGAGATGACTGCATGCTCTGGCTT
GTCCCTGTTCTGCCGCTGCTCCTGCCTCACAGGTCTCCCACTGTGACTAA
ATGTCAGTTTTCATCATCAAGTGCGAGCAGGGGATAAAAACAACCAGTTT
CTTAAAGCACCAACTGTGCAAATTGCTGCCCAGAGTCCGTAATAGTTTCC
CTTGTTACTTCGGACAGCAAGCGAGGGAGGGGAATAAGAGGGAAGGGAAC
AAAGGGTGGCCTCTCGGCCTCACTTACAGGCCATTTTTGTTCGAGATATT
TTAGTGTTGGTGGTGCCGTTCCATTTTGAGAGCTGGTTAGCCTAAGGACC
CTGCTAGGTAGAAAATGTGATTAAAGCTAGATAAAGCTTTATTTAAAAAT
ATTAGAGTAATTTCCTTACTTTGGTATCACTGTGACCAAAATACTTGTCA
GAAATAACACCCAGGAAGGAGTTACTTTGGCTAATGTCTTCAGGAAGATC
TGCTCACATTTACTAACTCCCCATGTGTGGGGAGAGAATCATGACTCTTG
AATAAAGACCTTCACTTGGGGAAGCAACACAGAAAGAGGGGATGTAAAAG
GTGACAGATACCCCTCCCATTGTTCTAATTCCTCCTTCATGGTTAACCAA
ACATCTTTTCATAACTTTCCATTAAGGTTTCCCAATAAATATCATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTT
GATTTTCTGGAGTCCACCTTCTTCAGTTCTTTATATATGTGAGATATTAA
TCCCCTATCTATTTATGTAAAGATCCTTTCCCAGTCTGTTGGTGGCCTTT
TTGTCTTATTGGCGGTGGCCTTTGCCTTACAGAAGCTTTGCAAATTTATG
AGGTCCCATTTGTCAATTCTCAATCTTACCGAACAAGCCATTGCTTGTTC
TATTGAGGAACTTTCCCCGTGCCCATCCGTATCTTTGAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTG
ATCCAATTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCC
GATTTTTCTACCGAAGCATAGTCTTTTTAAAGGAGAGACCAATGCCAGGT
ACAAGAGCAGTCGGGACCCACAGCGCCATCTTCAGGACACTCTTGAGAAG
CAATATGCTTCTGAGAGAAATCGAGGAAGACCTGCATAGAGGGTTTGAGA
ATTGTTAGCTGTTTTGAGGAGTGCTACTGGGGGAAGAAAACCTTGCCTGG
GGTTTTGGCTCCCATCCTGTTTCTTTAAAGATTCTTTGAAGCTCCTTCTT
TGCACTGTTAAAAGCGGGGATTATATCCCTTTTGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_l03.b1 MSMg01no382_l03.b1 CHROMAT_FILE:
MSMg01no382_l03.b1 PHD_FILE: MSMg01no382_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:31 2005
         (448 letters)



>mm_chr10_122079376_122080224
          Length = 849

 Score =  816 bits (422), Expect = 0.0
 Identities = 440/446 (98%), Gaps = 3/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaccctgtggaaagttcctttcatgtgctccactgagatgactgcatgctctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattcacaccctgtggaaagttcctttcatgtgctccactgagatgactgcatgctctg 590

                                                                       
Query: 65  gcttgtccctgttctgccgctgctcctgcctcacaggtctcccactgtgactaaatgtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gcttgtccctgttctgccgctgctcctgcctcacaggtctcccactgtgactaaatgtca 530

                                                                       
Query: 125 gttttcatcatcaagtgcgagcaggggataaaaacaaccagtttcttaaagcaccaactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gttttcatcatcaagtgcgagcaggggataaaaacaaccagtttcttaaagcaccaactg 470

                                                                       
Query: 185 tgcaaattgctgcccagagtccgtaatagtttcccttgttact-tcggacagcaagcgag 243
           ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct: 469 tgcaaattgctgcccagagtccgtaatagtttcccttgttactgt-ggacagcaagtgag 411

                                                                       
Query: 244 ggaggggaataagagggaagggaacaaagggtggcctctcggcctcacttacaggccatt 303
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 410 ggaggggaacaagagggaagggaacaaagggtggcctcgcggcctcacttacaggccatt 351

                                                                       
Query: 304 tttgttcgagatattttagtgttggtggtgccgttccattttgagagctggttagcctaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tttgttcgagatattttagtgttggtggtgccgttccattttgagagctggttagcctaa 291

                                                                       
Query: 364 ggaccctgctaggtagaaaatgtgattaaagctagataaagctttattt-aaaaatatta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 290 ggaccctgctaggtagaaaatgtgattaaagctagataaagctttatttaaaaaatatta 231

                                     
Query: 423 gagtaatttccttactttggtatcac 448
           ||||||||||||||||||||||||||
Sbjct: 230 gagtaatttccttactttggtatcac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 849
Length adjustment: 10
Effective length of query: 438
Effective length of database: 839
Effective search space:   367482
Effective search space used:   367482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)