BAC Information

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BAC

Clone NameMSMg01-382O15
Chromosome10 (Build37)
Map Location 10,451,749 - 10,452,250
singlet/doubletsinglet
Overlap geneGrm1
Upstream geneStxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382O15.T7 (MSMg01no382_o15.b1)MSMg01-382O15.TJ (MSMg01no382_o15.g1)
ACCAG486705AG486706
length1,234743
length of high quality
(start - end)		---502 (58 - 559)
definitionCHROMAT_FILE: MSMg01no382_o15.b1 PHD_FILE: MSMg01no382_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:48 2005CHROMAT_FILE: MSMg01no382_o15.g1 PHD_FILE: MSMg01no382_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTTCTTGTATTCTGTATNAACAGTAAATCCGATTGAGTGTGAGCGTAG
GCCAGCCGCGTGGTGTCGCAGTGTATCTATGAGTATCGATGAGGCTGCGT
GCGTGTGGAGTCGGCGTCGGTGCTGTGCGCTGTATGTCGAGGTGGACGTG
TGCTGGTCGCCTGGGATGCTGGTCTGATGGAGGTGGTGTCTCGGGGTGTG
GTNTGAGGTGCGGTCGGAGTGGACGCAATACGCGGAGTGTGAGTGCTAGA
GTGTACGCGGTCGGCGTGCNGCGAGTTGCGCCGACGAGCTCGGTGACGCT
ACATCGAGATGACGGCTGTAGCGGATCACGAGCTGGCGCAGGAATGCGCG
CGTGACANAACTTGCATGAGGGTCGTGTCTGCGTTAGGTTATTCCTGGGT
CGAGTGTAGTGGGATTCTGGATAGGGTGAGTAGAGTGGTGCGAGAGCCTC
GAGAACGGAGAAGACGAACATGCCCGCGTGAGTGCCTGCATGTGTGGGTG
GTTGTGTGGGCGGGCGCGGGAGAGAGGTTAATATATGTGGAGAGGCTGAC
AGGTGGAGGTCATGGAGCTGGGTATAGAGCAGTGAGGGATGAGGTGTGGG
GGTAGAGGTCGTTGGTTCGTGACTAATAGTCGTTGGTAGAGGGGAGCGTT
GGATGTGAGTCTTTGGGGTTGTGACATGTCTACGTGTCAAGCATGGAGCG
TCGTGATTGTCGAGTGTTGTGCGTCGTGAGTATGTTGTGGATGAGTGTTT
GCGTTCCACTNTCAGCGTGCGTAGCTAATCGTCGGTCCGTGGGCTGATGT
GCCGTATATGTGACTATGGCGAAGTTTGTATTTAGGTTAGATAGTCTTTG
TCGTATGTAGAGTGTGGTTTAGTGTGGATGCAGTGTTCTGCGATGTGTCG
GTAAGTACGCGTGTGTCGTGTGGTCTGTCGAGTGTGTGTAGGTGACATGG
GATGATGGTACTCTGGTCGTGTCGTCTAGTTGTCTGTTCTGGAGGCTGTC
TGGCGAGTGTGTAGGTGAGACGTGTCGTATGGAGCTGCTCTGTAACATGT
ATAGTGCTCGGATCGCACGGAGGCGTTGTCACGTACGTATGCGAGTATTG
GAGACGGCTATTCGTCGGTGGTTTAGGATTGTGCGTAGCGAGGCTGTTGA
CGTGTGGTAGCGTTCGCCGGTGCAGTGATGCGCGCGTTGGATATATCGTG
GCAGTTGGTCGCGTGTGATGGAGCGGTGTATGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCACATTGGTTTGGTTGATGGATACCCCAAATGTTGAGAAATGG
GGCTTGTTAGGATACTCATGGTGACTGATGGTATTTCTCTCAGCCCTTGC
CTGTGTTTACACCTTGGCTTTCTGGCTTTCAGCACTGTAGAGTTTTAAGG
TAGAGAATGGCAGTATGATACCTGCTTTGGGTATAGATCCAGTTCAAAGT
TGAATGCAGATGAAACTGGAAACAGCCAAGAGGGGGCTACTGCTATGATC
CCAGTGAGGCATCTCAGAAGGTGTGGACTGGAACAGTGACAGAAAGAAGG
AAGGGAAGTAACTGGATGTAGGAAACTATTTGGAAGCAAACTCAGTGTAG
TTGGATGTTCTTATCATGGAAACACACACACACACACACACACACGCAAA
TTCACACCTTTATAAAAAGCAGTGTTCATACAGTTCATTTTGTTTCCATA
GTCCCTAATATAAACTCACAAGAGAAATATTTCAACAATATTCCACATAA
TGTTTAAGTCTAGAGTTCTAGAAACTTTGGCATATGACTAAATATTGACT
CTGTGCACTAACCATTCATCTTAGTGGAAATAGAAGAACTCTAGAGGCCC
CGAACTGTGTGCAAAAACTCCTATGAAGTGAGAGCCTGTACCTGTGGATC
CCATGGCATCCTGGTCGCTTTTGAAATACTCAAATAAGGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_o15.g1 MSMg01no382_o15.g1 CHROMAT_FILE:
MSMg01no382_o15.g1 PHD_FILE: MSMg01no382_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:48 2005
         (502 letters)



>mm_chr10_10451690_10452591
          Length = 902

 Score =  909 bits (470), Expect = 0.0
 Identities = 494/502 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacattggtttggttgatggataccccaaatgttgagaaatggggcttgttaggatactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacattggtttggttgatggataccccaaatgttgagaaatggggcttgttaggatactc 502

                                                                       
Query: 61  atggtgactgatggtatttctctcagcccttgcctgtgtttacaccttggctttctggct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggtgactgttggtatttctctcagcccttgcctgtgtttacaccttggctttctggct 442

                                                                       
Query: 121 ttcagcactgtagagttttaaggtagagaatggcagtatgatacctgctttgggtataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcagcactgtagagttttaaggtagagaatggcagtatgatacctgctttgggtataga 382

                                                                       
Query: 181 tccagttcaaagttgaatgcagatgaaactggaaacagccaagagggggctactgctatg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagtttaaagttgaatgcagatgaaactggaaacagccaagagggggctactgctatg 322

                                                                       
Query: 241 atcccagtgaggcatctcagaaggtgtggactggaacagtgacagaaagaaggaagggaa 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcccagtgaggcatctcagagggtgtggactggaacagtgacagaaagaaggaagggaa 262

                                                                       
Query: 301 gtaactggatgtaggaaactatttggaagcaaactcagtgtagttggatgttcttatcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaactggatgtaggaaactatttggaagcaaactcagtgtagttggatgttcttatcat 202

                                                                       
Query: 361 ggaaacacacacacacacacacacacacgcaaattcacacctttataaaaagcagtgttc 420
           | ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 201 gtaaacacacacacacacacacacatacgcaaattcacacctttataaaaagcaatgttc 142

                                                                       
Query: 421 atacagttcattttgtttccatagtccctaatataaactcacaagagaaatatttcaaca 480
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 141 atacagttcattttgttttcatagtccctgatataaactcacaagagaaatatttcaaca 82

                                 
Query: 481 atattccacataatgtttaagt 502
           ||||||||||||||||||||||
Sbjct: 81  atattccacataatgtttaagt 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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