BAC Information

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BAC

Clone NameMSMg01-383L12
Chromosome10 (Build37)
Map Location 107,706,609 - 107,707,142
singlet/doubletsinglet
Overlap genePpp1r12a
Upstream geneLin7a, Myf5, Myf6, Ptprq, EG628870
Downstream genePawr, EG667814, Syt1, EG368203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383L12.T7 (MSMg01no383_l12.b1)MSMg01-383L12.TJ (MSMg01no383_l12.g1)
ACCAG487323AG487324
length740735
length of high quality
(start - end)		541 (44 - 584)526 (72 - 597)
definitionCHROMAT_FILE: MSMg01no383_l12.b1 PHD_FILE: MSMg01no383_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:50 2005CHROMAT_FILE: MSMg01no383_l12.g1 PHD_FILE: MSMg01no383_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAAGTTTTTTGTGATGCAAAAAATTGAACCCTAAAGACACTTAAGT
GTCCTCTGTCAGAGCTGCATACATCTGCAACCTCCCATATTTCTTCATAA
TAATTAGTATATGAGGCTGAAGAGATGGCTCAGTAGGTAAGAGCACTGGC
TACTCTTCCAGAGGACTCAGGTTTGGGTTCCAATAGCTATATCAGAGGTT
CTCAACCTGTGGGTCGCAACCCCTTTGGAGGGGCTTCAAATAACCCTTTC
ACAGGGGTCACCTACAGCCATCAGAAAACATAGATAATTACATTACAATT
CATAACAGTAGCAAATTACAGTTGTGAAGTAACAACAAAAGTAATTTTAT
GGGTGAGGGTTACCACATGGGAACTGTTATATATACAGCATTTGGAACAC
TCAGAAATACTAATCTACATGGTGGCTCACAGTGGTCTCTGACTCCAGTC
CATGAGATCTGATGTGCTCTTCTGACCTTTGGGCACAGACATACATGTGC
AGAAAACACCCATAGATGTAAAGCTTTTTTCCAAATTGTAAAGAGTATGT
GCTGTAAAGAGTTCCTGTTGTTCAAGTAAAGGTGATCAGAGCTCGTCATT
TAAGGAAATTTCCTGCTAATCTAGGGATCCCAATTCAGTTCCTATAACTG
AAGGTCTCACAGTTCAGTTCACGCCCATCCTGTAAATACC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTTCTGTTGCTCTCACTCCTTTCTTCT
CTTCCCCTCTCTATCCCTCACCATATCCTATTCTTTCTCCTCCCTCTTCC
TCTCCTTCCTCCCTTCTTCTCAAGCTCCATTTGTGAGTACTCAGTGTAGA
GGAATTTTAATCTAGCAACATGGCTGCTCTGGCAAAGGATCACATCCAAA
AACCTTCTAGGTTTATGTAATCTGGCTGGAACGACACACCTTTAATCCCT
CTATCTGGAATATTGACACACCATTTGTAAATGCCTTTAATCCTAAACGA
TGAAGGTAAAGTTAGTTTGTAGAAGGAAGCAGCCGTGTTTGAAAGTGATA
TCTAATTAAGCAACAGACAATGTGATGAACCAGAGAAAGATTTGACAGAA
TGAGTCAGAGACAGGATATGCCCAACCCTCATGAGACCAGCAGGAAAGAA
AGGCTACTTAAGAGCAGCTCAGAGTAGGTCAGGATGGAGGGCAGGTCAAT
GAGTGCAGTTGAGTTAAAGCAATTCAGTCAGTGCAGTTCAATTCGTGTAA
CTTAGAGGCAGTTTTTCTAAACAGACCAATTCCGTGAGAAGCCGAGGGAA
GCCAGTTTGAATCAGCCAGCTTGGAGAGGAGTTTGAACTAAAACAGTTGA
GTTGAAACAGTCAGGCCTAGTTCAAAAAGAAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_l12.b1 MSMg01no383_l12.b1 CHROMAT_FILE:
MSMg01no383_l12.b1 PHD_FILE: MSMg01no383_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:50 2005
         (541 letters)



>mm_chr10_107706405_107707345
          Length = 941

 Score = 1025 bits (530), Expect = 0.0
 Identities = 533/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaagttttttgtgatgcaaaaaattgaaccctaaagacacttaagtgtcctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaagttttttgtgatgcaaaaaattgaaccctaaagacacttaagtgtcctct 264

                                                                       
Query: 65  gtcagagctgcatacatctgcaacctcccatatttcttcataataattagtatatgaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcagagctgcatacatctgcaacctcccatatttcttcataataattagtatatgaggc 324

                                                                       
Query: 125 tgaagagatggctcagtaggtaagagcactggctactcttccagaggactcaggtttggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaagagatggctcagtaggtaagagcactggctactcttccagaggactcaggtttggg 384

                                                                       
Query: 185 ttccaatagctatatcagaggttctcaacctgtgggtcgcaacccctttggaggggcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttccaatagctatatcagaggttctcaacctgtgggtcgcaacccctttggaggggcttc 444

                                                                       
Query: 245 aaataaccctttcacaggggtcacctacagccatcagaaaacatagataattacattaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaataaccctttcacaggggtcacctacagccatcagaaaacatagataattacattaca 504

                                                                       
Query: 305 attcataacagtagcaaattacagttgtgaagtaacaacaaaagtaattttatgggtgag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attcataacagtagcaaattacagttgtgaagtaacaacaaaagtaattttatgggtgag 564

                                                                       
Query: 365 ggttaccacatgggaactgttatatatacagcatttggaacactcagaaatactaatcta 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 ggttaccacatgggaactgttatatatacagcatttggaacgctcagaaatactaatcta 624

                                                                       
Query: 425 catggtggctcacagtggtctctgactccagtccatgagatctgatgtgctcttctgacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catggtggctcacagtggtctctgactccagtccatgagatctgatgtgctcttctgacc 684

                                                                 
Query: 485 tttgggcacagacatacatgtgcagaaaacacccatagatgtaaagcttttttc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttgggcacagacatacatgtgcagaaaacacccatagatgtaaagcttttttc 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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