BAC Information

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BAC

Clone NameMSMg01-383N05
Chromosome10 (Build37)
Map Location 127,648,592 - 127,649,129
singlet/doubletsinglet
Overlap geneSpryd4
Upstream genePip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2
Downstream geneMip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383N05.T7 (MSMg01no383_n05.b1)MSMg01-383N05.TJ (MSMg01no383_n05.g1)
ACCAG487405AG487406
length765764
length of high quality
(start - end)		434 (68 - 501)538 (68 - 605)
definitionCHROMAT_FILE: MSMg01no383_n05.b1 PHD_FILE: MSMg01no383_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:58 2005CHROMAT_FILE: MSMg01no383_n05.g1 PHD_FILE: MSMg01no383_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
AGGAGTTGCAGTTTCAGACAGAAGTGCTGTAGACTCTGGGAATCAAACCC
TTGCCCTCTGAAACGGCAGCTAGTGCTCAGGTAACTGGTGATTCTTATCG
TCAGCCCAGATTTTGATAAGGTTAAGTTTCAAACCCGGGACAAATGGCTG
AGGTGCCTAATTAACATATCAAAGTGGACGTGGCCTCCAGGCTCTCCCAG
CATCCCTTAGTAGCCAGCCACCTGTTACAGGGTCTGGCTGACCCACTCTG
CCCTGTACCTGAACTCTCTAGCCCAAGGCCTGAACTACCCTTCTCCTTCC
CACAGAGACTCTTCCCTGTATAATCCAGACGTTTTGATTACCCACCCTTT
TTGTACCTTTGGGTTCCAGGCTGCTACACCTGGTTCCCTCTCTCCCTCTC
CTTTTCCCTCCCCTTACATGGGCAAGCTCAGTCTGATCATGTCCTCTGGA
CTGGGAATCCCTCGGCCTCTGGCTATGTTCTCCTACATATCTGTAATGAA
CTTTATCCTCCTCCATACCTAGGGGCAGNCATAGCCTTTCCCTCTTATTT
CCTTTTCATTCTTTATGCGGGCTTGATGTGTGGGTACTGGTCCCTTCCTC
CTTTCCCTGGATAACCCTCCCAGGCGGGAAGGATGCCCACCGCGCCCAAG
GGCCTAACCCGGGTGACACCGCTGAACCGCCCCCGCAGGGGTTAAAGGAC
CCTCTCCAAGGTTTA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGCCAATCCAGGCTACAGGAGACCCTGTTTC
AAAACCAAACAAATCAGAGACTCTGTTTACACAGGCTCTCTGGGTGTGTG
TGTGAGAGAGGGGTGTCCTACTTAGTTGAGATATAATCAGTACGTCTCTT
CACGTATTGATCTAGCTCGCCAGACTAGAAATCACCGAGATACCGATTTC
TCACGACACTCGCGTCTCGCACCACGTGCTCCGGGCGCGGACCAGTCATT
GGTCGGTGTCCCCTGGGGGCGTGCCCCGTGCATCTGTGGCACAAGATGGC
GCTGCCCTTTGCACGCTGTTGGAAGTTGTACCGCTGGGGCACCAAGCGAT
GGGGGGTCCCTGCTGTGGAATCCCGGAGAGGTAGGCATATTTCTTTTTTA
CTCTGTCACTCCAAAGTAGTTAACGTGTCATTCCCAGAGCGCGATCAGAG
AACTCCACTCCTCATTTCTCCTCTCTCCCCTCTGCCTTGATCTAGCAAGA
TTCCAAACCTGGGGCACCGGCTTCTGGCTTCCCCAGTCAGTGATTTGCAG
CTCCCAGGGCTGTCTTACTAAAGCGGCACCTCTGCTCTTTCCATGTTTAC
ATTTGACATTGACTTTTCTCGATTTCCCGNCATCGCCTGGACAGCTTTCA
GAACAAAACAGCCCTTAGGTTAAGAGTTTTTTTTTGTCTGGCCTCCGGAC
CATTTTTAATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_n05.g1 MSMg01no383_n05.g1 CHROMAT_FILE:
MSMg01no383_n05.g1 PHD_FILE: MSMg01no383_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:58 2005
         (538 letters)



>mm_chr10_127648346_127649283
          Length = 938

 Score = 1006 bits (520), Expect = 0.0
 Identities = 534/540 (98%), Gaps = 4/540 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccaatccaggctacaggagaccctgtttcaaaaccaaacaaatcagagactctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 caggccaatccaggctacaggagaccctgtttcaaaaccaaacaaatcagagactctgtt 725

                                                                       
Query: 61  tacacaggctctctgg--gtgtgtgtgtgagagaggggtgtcctacttagttgagatata 118
           ||||||||||||||||  ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 724 tacacaggctctctgggtgtgtgtgtgtgtgagaggggtatcctacttagttgagatata 665

                                                                       
Query: 119 atcagtacgtctcttcacgtattgatctagctcgccagactagaaatcaccgagataccg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atcagtacgtctcttcacgtattgatctagctcgccagactagaaatcaccgagataccg 605

                                                                       
Query: 179 atttctcacgacactcgcgtctcgcaccacgtgctccgggcgcggaccagtcattggtcg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atttctcacgacactcgcgtctcgcaccacgtgctccgggcgcggaccagtcattggtcg 545

                                                                       
Query: 239 gtgtcccctgggggcgtgccccgtgcatctgtggcacaagatggcgctgccctttgcacg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gtgtcccctgggggcgtgccccgtgcatctgtggcacaagatggcgctgccctttgcacg 485

                                                                       
Query: 299 ctgttggaagttgtaccgctggggcaccaagcgatggggggtccctgctgtggaatcccg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctgttggaagttgtaccgctggggcaccaagcgatggggggtccctgctgtggaatcccg 425

                                                                       
Query: 359 gagaggtaggcatatttcttttttactctgtcactccaaagtagttaacgtgtcattccc 418
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 424 gagaggtaggcatatttctttttta--ctgtcactccaaagtagttaacgtgtcattccc 367

                                                                       
Query: 419 agagcgcgatcagagaactccactcctcatttctcctctctcccctctgccttgatctag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agagcgcgatcagagaactccactcctcatttctcctctctcccctctgccttgatctag 307

                                                                       
Query: 479 caagattccaaacctggggcaccggcttctggcttccccagtcagtgatttgcagctccc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 caagattccaaacctggggcaccggcttctggcttccccagtcagtgatttgcagctccc 247


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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