BAC Information

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BAC

Clone NameMSMg01-384K06
Chromosome10 (Build37)
Map Location 86,311,665 - 86,498,377
singlet/doubletdoublet
Overlap geneStab2
Upstream genePwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik
Downstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384K06.T7 (MSMg01no384_k06.b1)MSMg01-384K06.TJ (MSMg01no384_k06.g1)
ACCAG488029AG488030
length740720
length of high quality
(start - end)		536 (39 - 574)522 (68 - 589)
definitionCHROMAT_FILE: MSMg01no384_k06.b1 PHD_FILE: MSMg01no384_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:59 2005CHROMAT_FILE: MSMg01no384_k06.g1 PHD_FILE: MSMg01no384_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,311,665 - 86,312,197)(86,497,856 - 86,498,377)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
CTCACCTTATTTTTCGGTAGCCCACTGTTCTGTGGCACAAACAGGGTGCC
ACTGATGGACAGGTCAGTCAGGTGTTTCAAAAACGCCCGGCCTTGGGCTG
AGCTCCTGGAAAAAACCAGCACCTCCTGGGGAACAGAAGAAAGTGTCAGA
TGGGCTACCGTGGTGTGGGAGCTGGGGTGGCTGGAGAAGCTGGAGAAGCC
TCTGAGAATACCCTTTTGCTAGGCTAAAGTCTGACTTCCTTTGTACTTCC
TATCACTGGCCTTGGCAGAGTATCGGGATGGCTAACATCCTAATGAGTCC
TAACGTCCTAAGATGCTCTGGGTACTGCTCCACTGCACAATGTCTGAGAC
AGTGCTTGTGTCCTGCCATGGGTGACTGCTCCATCTTACAGAGCAGCAGC
TGGCTCCATGCTGAGTGTCAACCCATTGGCAGGGTGGTTCTGCGTCTCAC
AGATGCACAAAGACACCACCATCATGATGCACAGGCTGATAAACAACTCA
TTCATACGTGTGAAAAGGAACCGCCTCTTCATGTAGACACAACCTCCTCA
GCCATAAAGGAAGAGCCATCTAGCACTGGGCCTCACTGATCTGTCGTCCA
GCCATCTAAGAAAGGGCATGCTTCTCCTGAATGATGGGGTAAAAAAGCCT
AATTGGTTTCCGTCTTCCTTTCCTGGGGGGGCCCTTCTGG

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTGGTTTGGTGGTTTAGTTGGGGGTCTTCTAC
ATCCCCCTAGGTCTCTCCCTTTTCTTTGACTAGCCCTGGATTACCATCCT
GGGTGGTAATCAACAGGAGTTAACATCTTGCCTAATGCAAGGAGACTAGC
TGGTGTAATTGCCAGCCTCTCCCTCTTGCTGAGTATTAAGCTAACCTGTG
AGGCTACCTGCAGCGGGAGGCGATCAAGTGCTGTTATCCTCGATGAGGAG
TTGGCTAAGCCAGGCTTTCTTGTCAGCAGAAAGCAAAGAACTGTGTTTGG
GAACTGGACGTATTGAGATGCCTGGATTGTCTCCCAACTCCTGAACTCAC
TGGTTTGAGTGAGTCCTTTTCATTGCATTAGGTAAAGAATGGAAAGCAGG
GAATTAAGTAGTGTTAGCATCCATCAAAACACACTAGTTGCTGGAATCCT
CCACCCTCTGGGGGCCATTGGCTATGTCCTAGTCTCAGAATTACTGGAGT
CAAGAAGCCATATCTGCCTCCCCAACCAGAAGTAAAGGCCACCCTCAGTT
TTAATTCAAGAACAAAACCCTCACTGCACCTGCTAAAGGAGCATCCAAAA
GTAATCCATGCTCTTGTAGTTCTTGTTGAACAGCATAAAATAAATCCCTG
ACCGCGTCTCTATTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_k06.b1 MSMg01no384_k06.b1 CHROMAT_FILE:
MSMg01no384_k06.b1 PHD_FILE: MSMg01no384_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:59 2005
         (536 letters)



>mm_chr10_86311462_86312397
          Length = 936

 Score =  961 bits (497), Expect = 0.0
 Identities = 524/533 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccactcaccttatttttcggtagcccactgttctgtggcacaaacagggtgcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccactcaccttatttttcggtagcccactgttctgtggcacaaacagggtgcca 263

                                                                       
Query: 64  ctgatggacaggtcagtcaggtgtttcaaaaacgcccggccttgggctgagctcctggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgatggacaggtcagtcaggtgtttcaaaaacgcccggccttgggctgagctcctggaa 323

                                                                       
Query: 124 aaaaccagcacctcctggggaacagaagaaagtgtcagatgggctaccgtggtgtgggag 183
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 aaaaccagcacctcctggggaacagaagaaagtgtcagatgggctaccatggtgtgggag 383

                                                                       
Query: 184 ctggggtggctggagaagctggagaagcctctgagaatacccttttgctaggctaaagtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggggtggctggagaagctggagaagcctctgagaatacccttttgctaggctaaagtc 443

                                                                       
Query: 244 tgacttcctttgtacttcctatcactggccttggcagagtatcgggatggctaacatcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgacttcctttgtacttcctatcactggccttggcagagtatcgggatggctaacatcct 503

                                                                       
Query: 304 aatgagtcctaacgtcctaagatgctctgggtactgctccactgcacaatgtctgagaca 363
           |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 504 aatgagtcctaatgtcctaagatgctctgggtactgctccactgcacattgtctgagaca 563

                                                                       
Query: 364 gtgcttgtgtcctgccatgggtgactgctccatcttacagagcagcagctggctccatgc 423
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 564 gtgcttgtgtcctgccatgggtgactgctctgtcttacagagcagcagctggctccatgc 623

                                                                       
Query: 424 tgagtgtcaacccattggcagggtggttctgcgtctcacagatgcacaaagacaccacca 483
           ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||
Sbjct: 624 tgagtgtaaacccattggcagggtggttctgtgtctcacggatgcacaaagacaccaaca 683

                                                                
Query: 484 tcatgatgcacaggctgataaacaactcattcatacgtgtgaaaaggaaccgc 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcatgatgcacaggctgataaacaactcattcatacgtgtgaaaaggaaccgc 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_k06.g1 MSMg01no384_k06.g1 CHROMAT_FILE:
MSMg01no384_k06.g1 PHD_FILE: MSMg01no384_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:59 2005
         (522 letters)



>mm_chr10_86497656_86498577
          Length = 922

 Score =  978 bits (506), Expect = 0.0
 Identities = 518/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggtttggtggtttagttgggggtcttctacatccccctaggtctctcccttttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgtggtttggtggtttagttgggggtcttctacatccccctaggtctctcccttttcttt 663

                                                                       
Query: 61  gactagccctggattaccatcctgggtggtaatcaacaggagttaacatcttgcctaatg 120
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 662 gactaaccctggattaccatcctggatggtaatcaacaggagttaacatcttgcctaatg 603

                                                                       
Query: 121 caaggagactagctggtgtaattgccagcctctccctcttgctgagtattaagctaacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 caaggagactagctggtgtaattgccagcctctccctcttgctgagtattaagctaacct 543

                                                                       
Query: 181 gtgaggctacctgcagcgggaggcgatcaagtgctgttatcctcgatgaggagttggcta 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 542 gtgaggctacctgcagcgggaggcgatcaagggctgttatcctcgatgaggagttggcta 483

                                                                       
Query: 241 agccaggctttcttgtcagcagaaagcaaagaactgtgtttgggaactggacgtattgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agccaggctttcttgtcagcagaaagcaaagaactgtgtttgggaactggacgtattgag 423

                                                                       
Query: 301 atgcctggattgtctcccaactcctgaactcactggtttgagtgagtccttttcattgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgcctggattgtctcccaactcctgaactcactggtttgagtgagtccttttcattgca 363

                                                                       
Query: 361 ttaggtaaagaatggaaagcagggaattaagtagtgttagcatccatcaaaacacactag 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 362 ttaggtaaagaatggaaagcagggaattaagtagcgttagcatccatcaaaacacactag 303

                                                                       
Query: 421 ttgctggaatcctccaccctctgggggccattggctatgtcctagtctcagaattactgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttgctggaatcctccaccctctgggggccattggctatgtcctagtctcagaattactgg 243

                                                     
Query: 481 agtcaagaagccatatctgcctccccaaccagaagtaaaggc 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agtcaagaagccatatctgcctccccaaccagaagtaaaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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