BAC Information

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BAC

Clone NameMSMg01-384L12
Chromosome10 (Build37)
Map Location 56,057,275 - 56,114,764
singlet/doubletdoublet
Overlap geneEG629732, Gja1
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik
Downstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384L12.T7 (MSMg01no384_l12.b1)MSMg01-384L12.TJ (MSMg01no384_l12.g1)
ACCAG488089AG488090
length749729
length of high quality
(start - end)		433 (39 - 471)595 (64 - 658)
definitionCHROMAT_FILE: MSMg01no384_l12.b1 PHD_FILE: MSMg01no384_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:04 2005CHROMAT_FILE: MSMg01no384_l12.g1 PHD_FILE: MSMg01no384_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,114,338 - 56,114,764)(56,057,275 - 56,057,867)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
CCCACTGCACTTTTATTGTGATGAAGAGATAATACAGGGCAGGGGTTACT
ACTCCCCATCTACCATGCAAATCCTGGGGATTTGATTGGCAGGTTGTTAG
GTTGGCAAGCTGGCACCATTACCTGGCAAACCATCTAATCATCTAATCAG
GCTAGGGTCTTTTTTCTTTTCTTTTCTTGTTTATAGAGTTGTGTGTGTGT
GTATACAATTTATGATATGCATTCATGTGTGTATGGTTGTTTGTGCATGG
AAACACATATGTACAGTATGTGGCATGTAAGTGTATGCCCTTATATACAA
TCTTCAATAGCTGTACTTCCATGTTTGCTTTTTGTTTTGTTTTGTTTTCT
GTGGCTTTTGTTGTTGTTGTTTGTTTTGCTTTTGTTTTGGGGTTGTTTTT
TGTTTGTTTATTTTTGAGAATGGGTCTCNCTGTATCTCTAGTTGACTTGG
AANTCNCAGAAATCTGCTTCTACCTGCCCTGCCTTGTCTGATGAGTGCTA
TAATTAAAAGCACCCCCCACCAAACCCATCTAGAATTTCTTATGTAGTCC
CACCCTATTCTCCCATTTTCCATCTGAAGAAAACCATGTGGCCCCTATCT
CTTCGTTTAAAAATAACTCTCCCCTTCCCTTTCCCCTCCCCTTTGACCAC
AAAGCTTTCCCCTAAGAAATCAACCTCAACCTTGCTATTTTCAAAATTT

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGTCCAGGGGGGACTATAAAGACCCTACTTTTAACA
CACACTCCCCAATAATAAAAATAACAGTCAAATGTCAGTATTATTTTTCT
TTGCACCATTTCTGTAATTGCTACTTTTTTTTCTTTGCCACCATGGCTTG
TGCACTTGACTATGTTTCTTATTTTCTAGTCTGTTTGGGGTTTTGTTTGT
TTGTTTCTTGTTTTCTGTTTCATTGTTATTGTTGTTGTTGTTTTGGTAAA
GGGTCTCACAGTGTAGCGGCAGCTGGCCTGGAACTTGCTAAGTAAACAAG
CTGGGCTCTAACTGATATAGCTCTGCCTACCTCTGCCTCCAGAATGCTGG
GATTAAAGGCATGTACCACGCCACACCTTCCCTTTTTAACAACAGAATCT
TGCTTTGCAGTTCTAGTTACACAAACCTTCACCACACAGCCCAGGCTAGT
CTTGAACTTCCAGTCTTCCTGCTTCAACCACCCCCGACCCCTGAATTACA
GATTTGGGCCTCTCATACCTATCGCATCACTTCACAAGATCTTTTGGATC
AAGAAGATCCTTGCCAAGAAACAAAAGCAAAATTCTCCTATTCCTTCAGC
GATTGGGAGAAAGCTAGTATAAGATCATGTATAATGGAAGAGAGGACACT
GCAGAAGAACCGGGCTAGGATGCTACGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_l12.b1 MSMg01no384_l12.b1 CHROMAT_FILE:
MSMg01no384_l12.b1 PHD_FILE: MSMg01no384_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:04 2005
         (433 letters)



>mm_chr10_56114224_56115056
          Length = 833

 Score =  818 bits (423), Expect = 0.0
 Identities = 426/427 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcccactgcacttttattgtgatgaagagataatacagggcaggggttactac 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattcctcccactgcacctttattgtgatgaagagataatacagggcaggggttactac 482

                                                                       
Query: 65  tccccatctaccatgcaaatcctggggatttgattggcaggttgttaggttggcaagctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccccatctaccatgcaaatcctggggatttgattggcaggttgttaggttggcaagctg 422

                                                                       
Query: 125 gcaccattacctggcaaaccatctaatcatctaatcaggctagggtcttttttcttttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcaccattacctggcaaaccatctaatcatctaatcaggctagggtcttttttcttttct 362

                                                                       
Query: 185 tttcttgtttatagagttgtgtgtgtgtgtatacaatttatgatatgcattcatgtgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttcttgtttatagagttgtgtgtgtgtgtatacaatttatgatatgcattcatgtgtgt 302

                                                                       
Query: 245 atggttgtttgtgcatggaaacacatatgtacagtatgtggcatgtaagtgtatgccctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atggttgtttgtgcatggaaacacatatgtacagtatgtggcatgtaagtgtatgccctt 242

                                                                       
Query: 305 atatacaatcttcaatagctgtacttccatgtttgctttttgttttgttttgttttctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atatacaatcttcaatagctgtacttccatgtttgctttttgttttgttttgttttctgt 182

                                                                       
Query: 365 ggcttttgttgttgttgtttgttttgcttttgttttggggttgttttttgtttgtttatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcttttgttgttgttgtttgttttgcttttgttttggggttgttttttgtttgtttatt 122

                  
Query: 425 tttgaga 431
           |||||||
Sbjct: 121 tttgaga 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_l12.g1 MSMg01no384_l12.g1 CHROMAT_FILE:
MSMg01no384_l12.g1 PHD_FILE: MSMg01no384_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:04 2005
         (595 letters)



>mm_chr10_56057075_56058069
          Length = 995

 Score = 1038 bits (537), Expect = 0.0
 Identities = 579/593 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtccaggggggactataaagaccctacttttaacacacactccccaataataaaaata 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cagtccaggggggactataaagaccctgcttttaacacacactccccaataataaaaata 260

                                                                       
Query: 61  acagtcaaatgtcagtattatttttctttgcaccatttctgtaattgctacttttttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtcaaatgtcagtattatttttctttgcaccatttctgtaattgctacttttttttc 320

                                                                       
Query: 121 tttgccaccatggcttgtgcacttgactatgtttcttattttctagtctgtttggggttt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgccaccatggcatgtgcacttgactatgtttcttattttctagtctgtttggggttt 380

                                                                       
Query: 181 tgtttgtttgtttcttgttttctgtttcattgttattgttgttgttgttttggtaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tgtttgtttgtttcttgttttctgtttcattgttattgttgttgttgttttggtacaggg 440

                                                                       
Query: 241 tctcacagtgtagcggcagctggcctggaacttgctaagtaaacaagctgggctctaact 300
           ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tctcacagtgtagcggctgctggcctggaacttgctaagtaaataagctgggctctaact 500

                                                                       
Query: 301 gatatagctctgcctacctctgcctccagaatgctgggattaaaggcatgtaccacgcca 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatatagatctgcctacctctgcctccagaatgctgggattaaaggcatgtaccacgcca 560

                                                                       
Query: 361 caccttccctttttaacaacagaatcttgctttgcagttctagttacacaaaccttcacc 420
           |||| || ||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 561 caccctctctttttaacaacaaaatcttactttgcagttctagttacacaaaccttcacc 620

                                                                       
Query: 421 acacagcccaggctagtcttgaacttccagtcttcctgcttcaaccacccccgacccctg 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 acacagcccaggctagtcttgaacttccagtcttcctgcctcaaccacccccgacccctg 680

                                                                       
Query: 481 aattacagatttgggcctctcatacctatcgcatcacttcacaagatcttttggatcaag 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 aattacagatttgggcctctcatacctatcgcatcacttcacaagatcttttggattaag 740

                                                                
Query: 541 aagatccttgccaagaaacaaaagcaaaattctcctattccttcagcgattgg 593
           ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 741 aagatccttgccaagaaacaaaagcaaaattctcccattccttcagtgattgg 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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