BAC Information

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BAC

Clone NameMSMg01-384M21
Chromosome10 (Build37)
Map Location 66,072,236 - 66,072,650
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384M21.T7 (MSMg01no384_m21.b1)MSMg01-384M21.TJ (MSMg01no384_m21.g1)
ACCAG488154AG488155
length787768
length of high quality
(start - end)		422 (33 - 454)414 (64 - 477)
definitionCHROMAT_FILE: MSMg01no384_m21.b1 PHD_FILE: MSMg01no384_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:11 2005CHROMAT_FILE: MSMg01no384_m21.g1 PHD_FILE: MSMg01no384_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATCTT
TCCAGATTTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCA
GCATCTAATGAGATGGTCATGTGGTTTTTGTCTTTGAGTTTGTTTATATA
GTGGATTACCTTGATGGATTTCTGTATATTAAACCATCCTTGCATCTCTG
GGAGGAAGCCTACTTGATCATGATGGATGATCATTTTGATATGTTCTTGG
ATTCGGTTTGCAAGGATTTTATTGAGTATTTTTGCATCGATATTCATAAG
GGAAATTGGTCTGAAGTTTTCTTTCTTTGTTGGATCTTTGTGTGGTTTAG
GTATCAGAGTAATTGTGGCTTCATAGAATGAATTGGGTAGAGTACCTTCT
GTTTCTATTTTGTGGAATAGTTTGAGGAGAGTTGGAATTAGGTCTTCTTT
GAAGGTCTGATANAACTCTGCACTAAACCCACCTGGCCCTGGGCTTTTTT
TTTGGCTGGGAGAATATTAATGACTGGATCTTATTTCTTTAGAGGCTAAA
GGTAATGTTTATCTCCCTTTCCTCGCTCTCTGCTTTATTCCTTCCCCTCT
CCTACCGTCCCTACATCTCTTTCCTCTTTTCCTTTTTTCTTTCATCTTCC
TCACTTTTTTCTTCTCCTTCCCTCTCCTTCTTCACCTTCCTTTCTTTTCC
TCTTTTTTCTCTTTTCTTCTCCTCTCTTTCTTCCCTTCCTTTTCTCTTCT
TTCTTTTTCCTTCTCCTTTTGCTTTCTTCTCTTCCTT

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGAATATCTGGCTCTCCCATTAAAGAACCCTTCAGAT
GAAGCCCTGGTTTCTTTCTATAGACAATGCAGGGATTATGGGGTCTGGGT
CCACCAAGATCCTCACAGAGAAACAAACCAGGAAGAGACAGATATTAGGA
GATGCTCGCAGGGCATTGGTTCCTACAGCTGTGAAACCCAGTTCAGCAAG
TCTGAAGCCCTCATGAAGCCAGCAAGTGATACACACTGATACTCTCGGCA
TAGGCTTGTGTAGAGCCACCTCCAGAAATCCGTCTTCTGGGAGCTTCCAT
CTGACTGGATGGGCCTCACTTACCTTATCCAAGAAAGTCCTTGACTCAGA
GGCAACTTATCCTTACTGTTACCTACACCCACTGTCTTAGTCAAGGTTTC
TATTCCTCCACAAACATCACGACCAAGAAGCAAGTTGGGGAGGAAAGGGT
TATTCAGCTTACTTTTCACATTTGCTGGTCTCACCAAAGAAGTCAGGACT
GGAACTCTAACGGGTCAAAAGCAGGAGCTGATGCGTAAACCCTGGAGGGA
GGGCCTTTCGGGGTTGTTCCCCCGAATTGTGCACATTGGTTTTTTAAAAA
AACAGGATATTATTCCCGGGGGGGCGGCCTTACTTTGGCCTCCCCGCTGT
TTTCTTGGGAAAAATGCCCCACCCTTTTTTTGGGGAGCTTTCCCCGGATG
TCTCTTTTTCTTTTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_m21.g1 MSMg01no384_m21.g1 CHROMAT_FILE:
MSMg01no384_m21.g1 PHD_FILE: MSMg01no384_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:11 2005
         (414 letters)



>mm_chr10_66072036_66072850
          Length = 815

 Score =  725 bits (375), Expect = 0.0
 Identities = 405/415 (97%), Gaps = 1/415 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatatctggctctcccattaaagaacccttcagatgaagccctggtttctttctatag 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacatctggctctcccattaaagaacccttcagatgaagccctggtttctttctatag 260

                                                                       
Query: 61  acaatgcagggattatggggtctgggtccaccaagatcctcacagagaaacaaaccagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatgcagggattatggggtctgggtccaccaagatcctcacagagaaacaaaccagga 320

                                                                       
Query: 121 agagacagatattaggagatgctc-gcagggcattggttcctacagctgtgaaacccagt 179
           ||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct: 321 agagacagatactaggagatgctctgcaggacattggttcatacagctgtgaaacccagt 380

                                                                       
Query: 180 tcagcaagtctgaagccctcatgaagccagcaagtgatacacactgatactctcggcata 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tcagcaagtctgaagccctcatgaagccagcaagtgatacacaccgatactctcggcata 440

                                                                       
Query: 240 ggcttgtgtagagccacctccagaaatccgtcttctgggagcttccatctgactggatgg 299
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ggcttgtgtagagccacctccagaaatccttcttctgggagcttccatctgactggatgg 500

                                                                       
Query: 300 gcctcacttaccttatccaagaaagtccttgactcagaggcaacttatccttactgttac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctcacttaccttatccaagaaagtccttgactcagaggcaacttatccttactgttac 560

                                                                  
Query: 360 ctacacccactgtcttagtcaaggtttctattcctccacaaacatcacgaccaag 414
           ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||
Sbjct: 561 ctacacccactgtcttagtcagggtttctattcctgtacaaacatcacgaccaag 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 815
Length adjustment: 9
Effective length of query: 405
Effective length of database: 806
Effective search space:   326430
Effective search space used:   326430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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