BAC Information

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BAC

Clone NameMSMg01-385C19
Chromosome10 (Build37)
Map Location 33,132,995 - 33,301,057
singlet/doubletdoublet
Overlap geneTrdn, A330019N05Rik
Upstream geneTcba1, EG667761
Downstream geneLOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385C19.T7 (MSMg01no385_c19.b1)MSMg01-385C19.TJ (MSMg01no385_c19.g1)
ACCAG488437AG488438
length740737
length of high quality
(start - end)		562 (35 - 596)506 (65 - 570)
definitionCHROMAT_FILE: MSMg01no385_c19.b1 PHD_FILE: MSMg01no385_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:40 2005CHROMAT_FILE: MSMg01no385_c19.g1 PHD_FILE: MSMg01no385_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,132,995 - 33,133,552)(33,300,637 - 33,301,057)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACCTG
TGGAAATTACTTGGCAGGGAGACATTTCTAGAATAATTTTTGTAATCACG
ATACACCCTTCATTTCTCCGTTTGCTCATGGGTTTTTAGTTTGTTTTGTT
TTAGTTTTTTATATACAGTCCAGCTTTGTTACCCAGGCCAGCCTTGAACT
CCTGGTGAACCTCAGTCTTTACCTCTCAAATATACAGGGCTCTAGACATG
TGCCTCTGGACCTACTGGCCTCTTTGTTCTGTGTTTCTTTGACAGAAAAC
AAACAGGTAATTTCATTGACTGCCTATGTGGGTTTGGTGTGGTTTAGAAA
ACCTTGTCTCTCCTGGGCCTCTTTGGGGGATTCAGGGGAGTCTATTTGAA
CTCATGCTTTAGGTCTGAGAGATTGATCACTGGAACTCCCTCAACACAAT
CTGAAGCATGATTTCATTTTTCAAAGATGAGCTTGCATGGTACCATCACC
ATGGCCTCCAACATCAATAGAACAGGTAGAAGGATGCCAAAGACAAGTTC
AGGGCTCTTTCTAGGGTGATTACTCTGTCATGTATAATATGACACTCTAG
CCAGATTTTCCGGAAGCCCTGGCTCCATCCTAAACCTACACAGGACTGCT
GCAAAAAAAGTTTTATGAAATCACCCTGACTGGAACGAAATCTGGTTATT
TGTTAAATAAAGCCCTATCCCTGTTTGAAATATTCTACAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAATAAATATTTGAATACCTTGCCTCATTTCTAACCT
GGACCAGTCTTCAGAGTCCAAATACAAAAAGTAAAAAGTGCAGATTTCGA
CGCAGAAGAGCATGAAGCACAAGAGAATTGTTTCATTGCTTTTAAAATTT
TTTGATGAGGGTCTCACTTAACCCAGGCTAGCCTCAAGCTTGTACTATAG
CCAAGAGTGACTTTTGCTCCTCCTGTTTCCATGTCCTCTGTGTTGGAGTT
GAAAGATTTACATAATCATGCCAAGTTTTTCTGATTTTGGAGACTCAACT
TTTTGCCCTGTATATGCCAAAGAGACTCTATACAATCTAATGGATACCTC
CATTTTTATATAGATTCACTGCCATTTCAGATCAAAGTACACTGGAATAA
GGGAGTTACAAGGCCAATTCAAGGGCAATTGAACATGGGAGCCAAAGTAA
CATTCATATCTTGGGACATAAATCACCTTAATCTTCCATCGATATTTAGA
CTTGGAACTTATAGGAACAAGAAAATTGTAAGAAAGTGGGCTGGGGGTAT
CTGAAAGNTGACTCATGGNATGTGGNATGTTCACTTGATCTTGGAGCTCA
TCTCCCGTAACTTTAGTGAAAGCTGAATTGTGACAACAATCTTCTTTTTC
CAATTTCCATGTAAAAAAAAAAAAAAAAGAAAAGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_c19.b1 MSMg01no385_c19.b1 CHROMAT_FILE:
MSMg01no385_c19.b1 PHD_FILE: MSMg01no385_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:40 2005
         (562 letters)



>mm_chr10_33132791_33133752
          Length = 962

 Score = 1071 bits (554), Expect = 0.0
 Identities = 557/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacctgtggaaattacttggcagggagacatttctagaataatttttgtaatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacctgtggaaattacttggcagggagacatttctagaataatttttgtaatca 264

                                                                       
Query: 65  cgatacacccttcatttctccgtttgctcatgggtttttagtttgttttgttttagtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgatacacccttcatttctccgtttgctcatgggtttttagtttgttttgttttagtttt 324

                                                                       
Query: 125 ttatatacagtccagctttgttacccaggccagccttgaactcctggtgaacctcagtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatatacagtccagctttgttacccaggccagccttgaactcctggtgaacctcagtct 384

                                                                       
Query: 185 ttacctctcaaatatacagggctctagacatgtgcctctggacctactggcctctttgtt 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacctctcaaatacacagggctctagacatgtgcctctggacctactggcctctttgtt 444

                                                                       
Query: 245 ctgtgtttctttgacagaaaacaaacaggtaatttcattgactgcctatgtgggtttggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtgtttctttgacagaaaacaaacaggtaatttcattgactgcctatgtgggtttggt 504

                                                                       
Query: 305 gtggtttagaaaaccttgtctctcctgggcctctttgggggattcaggggagtctatttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtggtttagaaaaccttgtctctcctgggcctctttgggggattcaggggagtctatttg 564

                                                                       
Query: 365 aactcatgctttaggtctgagagattgatcactggaactccctcaacacaatctgaagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aactcatgctttaggtctgagagattgatcactggaactccctcaacacaatctgaagca 624

                                                                       
Query: 425 tgatttcatttttcaaagatgagcttgcatggtaccatcaccatggcctccaacatcaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgatttcatttttcaaagatgagcttgcatggtaccatcaccatggcctccaacatcaat 684

                                                                       
Query: 485 agaacaggtagaaggatgccaaagacaagttcagggctctttctagggtgattactctgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agaacaggtagaaggatgccaaagacaagttcagggctctttctagggtgattactctgt 744

                             
Query: 545 catgtataatatgacact 562
           ||||||||||||||||||
Sbjct: 745 catgtataatatgacact 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_c19.g1 MSMg01no385_c19.g1 CHROMAT_FILE:
MSMg01no385_c19.g1 PHD_FILE: MSMg01no385_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:40 2005
         (506 letters)



>mm_chr10_33300152_33301057
          Length = 906

 Score =  814 bits (421), Expect = 0.0
 Identities = 421/421 (100%)
 Strand = Plus / Minus

                                                                       
Query: 86  acgcagaagagcatgaagcacaagagaattgtttcattgcttttaaaattttttgatgag 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 acgcagaagagcatgaagcacaagagaattgtttcattgcttttaaaattttttgatgag 847

                                                                       
Query: 146 ggtctcacttaacccaggctagcctcaagcttgtactatagccaagagtgacttttgctc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ggtctcacttaacccaggctagcctcaagcttgtactatagccaagagtgacttttgctc 787

                                                                       
Query: 206 ctcctgtttccatgtcctctgtgttggagttgaaagatttacataatcatgccaagtttt 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ctcctgtttccatgtcctctgtgttggagttgaaagatttacataatcatgccaagtttt 727

                                                                       
Query: 266 tctgattttggagactcaactttttgccctgtatatgccaaagagactctatacaatcta 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tctgattttggagactcaactttttgccctgtatatgccaaagagactctatacaatcta 667

                                                                       
Query: 326 atggatacctccatttttatatagattcactgccatttcagatcaaagtacactggaata 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atggatacctccatttttatatagattcactgccatttcagatcaaagtacactggaata 607

                                                                       
Query: 386 agggagttacaaggccaattcaagggcaattgaacatgggagccaaagtaacattcatat 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agggagttacaaggccaattcaagggcaattgaacatgggagccaaagtaacattcatat 547

                                                                       
Query: 446 cttgggacataaatcaccttaatcttccatcgatatttagacttggaacttataggaaca 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cttgggacataaatcaccttaatcttccatcgatatttagacttggaacttataggaaca 487

            
Query: 506 a 506
           |
Sbjct: 486 a 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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