BAC Information

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BAC

Clone NameMSMg01-385I04
Chromosome10 (Build37)
Map Location 113,792,915 - 113,875,993
singlet/doubletdoublet
Overlap geneTrhde
Upstream geneLOC100042655, LOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385I04.T7 (MSMg01no385_i04.b1)MSMg01-385I04.TJ (MSMg01no385_i04.g1)
ACCAG488694AG488695
length764744
length of high quality
(start - end)		202 (23 - 224)508 (60 - 567)
definitionCHROMAT_FILE: MSMg01no385_i04.b1 PHD_FILE: MSMg01no385_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:06 2005CHROMAT_FILE: MSMg01no385_i04.g1 PHD_FILE: MSMg01no385_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,792,915 - 113,793,102)(113,875,554 - 113,875,993)
sequence
GCTAGACGACTCACTATTTCGAGAGGATCCGCGGAATTCAATATTTTGTG
AAAACACACTATATTAAAGTCAAGAACTTACTATTTCCAGCAGATACTAT
GCCCTGAGTAGTTTTTGATTCTCTTTATTATGATATCATAGTATACTTTG
AATGGCAAGAGTACAGTAATTGTCCTGAGTTTCATTTGTTTGGGTGGTTG
ATTGGTTGATTGTTTGGTTGGTTGCATTTCTATTGTTTTTTTTCCTCCCT
TCCTCGTTTGTGTTCTTTGCCTCCGTTTCCTCTCCGGTTCGCGGACTCTC
GTTTTTCTTTCCCCGTGTTTGTTGTTTTTCTCTTTTCTCTTTATCCCCTT
TTGTTCCATCTTCCATACTCCTTCCTTTATCCCTCATATTCTCCCCCCCC
TTCCGTTTACCCCTTTTTCCCTTTTGTTTTCCTCCTTTATTCTTTTTCCC
TCCTTTTTATTTCCCCCATCTCCTTTTCTTTTCTTTTTTCTCTTTTCTTT
TCCTCTTTTTCCTCTTCCTCTCTCCCTTCTCTTTTCTTTCCCCCCTTTTT
CTCCCCCTTATACCACCATATTTCCTTTATACATTCTCCTTTCATATCCC
TTCCTTTATACCCTCCCCCTCACTTTCTCCTCTCTATTTTACCATCTCAC
ACCTCCGTATTCCTTTCCCTCCTTGTACTTTTTCCTTCCCTATTTTTTTC
CCTTTTCCTCCTTCTTTCACTCCCCTCTCCTTTATTTTTCTCTATTTTCT
CACCCTCCTCCGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTGTTTAGCGCCCTACTCTATTTTTAATAGGGTTATTTGT
TTCTCTGAATCTCTTAACTCTAATTTAAAATAATACTTTAACATGGGGCT
GGGAAATAACTCAGTTAATGGAGGACTTTCCAGGCACATGGCTTCTATTC
ATCGAATCTTTATGTATGATAATATCTTTCTATCATCTCAGTATTGGAGA
AACAAGGAGAGGTGATTCTTTGGAAATTACTGGTCAACCAACCTAGCTAA
GTAAGAGGCTTTGTCTCAAATACTAAGGTGGGCAGTTCCTAAATAGCAAT
ACCTCATGTTATCCTCTGGCTTCCACAGACACACAGACTACAGACACACA
GATACACACCGACACACTGACACCTATACACATAGACACATATACTCAGC
CACACATATAAACACATGTATACATACCCACATATAAACACTTATATACA
TACACACATATAGACACATATATACATATGCACATAAACACTAAGATACC
CACACATATATATACATACATACATACATACACACTCTAACACACACTCT
CACTCATTCCCATATTTTTTTACATATATATATATATTTATATATATATA
TATATATATATCCTCTCTTTTTTTTATTTCCTAACATGCTCTCTCCCCCC
TCTTTTATTTAATACCGGAATGTACTTCTCCCTGTAATCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_i04.b1 MSMg01no385_i04.b1 CHROMAT_FILE:
MSMg01no385_i04.b1 PHD_FILE: MSMg01no385_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:06 2005
         (202 letters)



>mm_chr10_113792704_113793305
          Length = 602

 Score =  348 bits (180), Expect = e-100
 Identities = 186/188 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  gaattcaatattttgtgaaaacacactatattaaagtcaagaacttactatttccagcag 71
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 212 gaattcaatattttgtgaaaacacactatattaaagtcaagaacttattatttccagcag 271

                                                                       
Query: 72  atactatgccctgagtagtttttgattctctttattatgatatcatagtatactttgaat 131
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atactatgccctgagtagtttgtgattctctttattatgatatcatagtatactttgaat 331

                                                                       
Query: 132 ggcaagagtacagtaattgtcctgagtttcatttgtttgggtggttgattggttgattgt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggcaagagtacagtaattgtcctgagtttcatttgtttgggtggttgattggttgattgt 391

                   
Query: 192 ttggttgg 199
           ||||||||
Sbjct: 392 ttggttgg 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no385_i04.g1 MSMg01no385_i04.g1 CHROMAT_FILE:
MSMg01no385_i04.g1 PHD_FILE: MSMg01no385_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:06 2005
         (508 letters)



>mm_chr10_113875554_113876461
          Length = 908

 Score =  758 bits (392), Expect = 0.0
 Identities = 428/440 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagcgccctactctatttttaatagggttatttgtttctctgaatctcttaact 60
           |||||||||| |||||||||||||||||||||||| ||||||||||||  ||||||||||
Sbjct: 440 tttgtttagcaccctactctatttttaatagggttgtttgtttctctgggtctcttaact 381

                                                                       
Query: 61  ctaatttaaaataatactttaacatggggctgggaaataactcagttaatggaggacttt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctactttaaaataatactttaacatggggctgggaaataactcagttaatggaggacttt 321

                                                                       
Query: 121 ccaggcacatggcttctattcatcgaatctttatgtatgataatatctttctatcatctc 180
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaggcccatggcttctatttatcgaatctttatgtatgataatatctttctatcatctc 261

                                                                       
Query: 181 agtattggagaaacaaggagaggtgattctttggaaattactggtcaaccaacctagcta 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agtattggagaagcaaggagaggtgattctttggaaattactggtcaaccaacctagcta 201

                                                                       
Query: 241 agtaagaggctttgtctcaaatactaaggtgggcagttcctaaatagcaatacctcatgt 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agtaagaggctttgtctcacatactaaggtgggcagttcctaaatagcaatacctcatgt 141

                                                                       
Query: 301 tatcctctggcttccacagacacacagactacagacacacagatacacaccgacacactg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 140 tatcctctggcttccacagacacacagactacagacacacagatacacactgacacactg 81

                                                                       
Query: 361 acacctatacacatagacacatatactcagccacacatataaacacatgtatacataccc 420
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 80  acacctatacacatagacacatatacacagacacacatataaacacatgtatacataccc 21

                               
Query: 421 acatataaacacttatatac 440
           ||||||||||||||||||||
Sbjct: 20  acatataaacacttatatac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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