BAC Information

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BAC

Clone NameMSMg01-386I24
Chromosome10 (Build37)
Map Location 15,284,032 - 15,284,607
singlet/doubletsinglet
Overlap geneLOC637043
Upstream geneLOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
Downstream geneLOC100039492, LOC671439, LOC382457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386I24.T7 (MSMg01no386_i24.b1)MSMg01-386I24.TJ (MSMg01no386_i24.g1)
ACCAG489501AG489502
length740740
length of high quality
(start - end)
385 (328 - 712)623 (69 - 691)
definitionCHROMAT_FILE: MSMg01no386_i24.b1 PHD_FILE: MSMg01no386_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:24 2005CHROMAT_FILE: MSMg01no386_i24.g1 PHD_FILE: MSMg01no386_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGATCTGCGCGGAAT
TCTGGGAACTTACTCAAAGCTCTGCAAAATCACCAGTTTCTTAATCACTA
GGAAACCTTTTCCAGGCCTTTGCTGCTTGTTTCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCAACCTCACAAGGTTTCCTGGAGGGGAGGAAA
CCTGAAAAGGGGATAACATTTTAAATGTAAATAAAGAAAACATCATAAAA
CAAAACAAAACAAAACAAAAAACCCTCAGGTGACAGCAAATGTTGACAAG
GATGTGGAGAAAGAGGAACACTCTTTCATTGGTGGTGGGATTGCAAGCTT
GTACAACAACTCTGGAAATCAATTTGGTGGTTCCTCAGAAAATTAGACAT
AGTACTACCTGAGGACCCAGCTATACCACTCCTGCACATATATCCAGAAG
ATGCTCCAACATGTAATAAAGACACATGTTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGAAAAGAGCCCAGATGTCCCTCAACAGA
GGAATAGATACAGAAAATGTGGTACATTTACACAATGGAGGGCTACTCAG
CTATCAAAAACAATGACTTCACAAAATTCTTAGGCAAATGGAAGGAACTA
GAAAATATCATCCTGAGTGATGTAACCCAATCACAAAAGAATACACATGA
TATGCACTCACTGATAAGTGGATATTAGCCCATAAGCTCA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGAAATTCTTTAACAATTTTAAAAGTGGAAATGATTAA
TAGTATGGATAAAAAATAAAAGCCAGATGAAATAAAATAAATATGTAATG
ACAATTAAGCAAGTATAATGCTGGCCTTAATAACAATAATAATTGGAGAC
TGTCTACCAAGTTGAAATATAAATAAATTTAAACAAATCCTTGTTAAAAG
GTTGCACATGTTTTTAATTTCTTAGTGTGCACTATTTTACCTTTAAGGGT
CTATCACTCAATTCCAAATTGTTCTGCTAACTATCAACTTAAGATTCACT
GACCCTTAGCCAATGAAACCACATTAAATATAAATGTTCTATTCATGAAA
TTATTTTATTGACCCTTAGAGACATTCAGTTTTTAGCTTAAAAACATTAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACATTTTTGTTTCTAAAAGGACTCTTTCATGGGGTCATGC
AACAGAGAGCAAGAATTTAAGCATTCCCCTGTGTGCAGTGGGAATACATT
CTGTATTTGAAAGCATTCAAAGGCTTTCCTTTCCTCAGGGGCATTGTGTT
TCAGCTTTATGAAGGAGTCCTTTAGAATAATTTGAACTTAGCTTAGAGAA
GAAAGAATAGGAATGAGGAAAAAGGAGAAAAATTCAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_i24.g1 MSMg01no386_i24.g1 CHROMAT_FILE:
MSMg01no386_i24.g1 PHD_FILE: MSMg01no386_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:24 2005
         (623 letters)



>mm_chr10_15284028_15285050
          Length = 1023

 Score = 1052 bits (544), Expect = 0.0
 Identities = 574/598 (95%), Gaps = 22/598 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttaacaattttaaaagtggaaatgattaatagtatggataaaaaataaaagccagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tctttaacaattttaaaagtggaaatgattaatagtatggataaaaaataaaagccagat 521

                                                                       
Query: 61  gaaataaaataaatatgtaatgacaattaagcaagtataatgctggccttaataacaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaaataaaataaatatgtaatgacaattaagcaagtataatgctggccttaataacaata 461

                                                                       
Query: 121 ataattggagactgtctaccaagttgaaatataaataaatttaaacaaatccttgttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 460 ataattggagactgtctaccaagttgaaatataaataaatttaaacaaacccttgttaaa 401

                                                                       
Query: 181 aggttgcacatgtttttaatttcttagtgtgcactattttacctttaagggtctatcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aggttgcacatgtttttaatttcttagtgtgcactattttacctttaagggtctatcact 341

                                                                       
Query: 241 caattccaaattgttctgctaactatcaacttaagattcactgacccttagccaatgaaa 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caattccaaattgtcctgctaactatcaacttaagattcactgacccttagccaatgaaa 281

                                                                       
Query: 301 ccacattaaatataaatgttctattcatgaaattattttattgacccttagagacattca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccacattaaatataaatgttctattcatgaaattattttattgacccttagagacattca 221

                                                                       
Query: 361 gtttttagcttaaaaacattacacacacacacacacacacacacacacacacacacacac 420
           ||||||||||||||||||||                      ||||||||||||||||||
Sbjct: 220 gtttttagcttaaaaacatt----------------------acacacacacacacacac 183

                                                                       
Query: 421 acacacacacacacacacacacacatttttgtttctaaaaggactctttcatggggtcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 acacacacacacacacacacacacatttttgtttctaaaaggactctttcatggggtcat 123

                                                                       
Query: 481 gcaacagagagcaagaatttaagcattcccctgtgtgcagtgggaatacattctgtattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gcaacagagagcaagaatttaagcattcccctgtgtgcagtgggaatacattctgtattt 63

                                                                     
Query: 541 gaaagcattcaaaggctttcctttcctcaggggcattgtgtttcagctttatgaagga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  gaaagcattcaaaggctttcctttcctcaggggcattgtgtttcagctttatgaagga 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)