Query= MSMg01no386_j16.b1 MSMg01no386_j16.b1 CHROMAT_FILE:
MSMg01no386_j16.b1 PHD_FILE: MSMg01no386_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:27 2005
(539 letters)
>mm_chr10_124476798_124477736
Length = 939
Score = 913 bits (472), Expect = 0.0
Identities = 520/536 (97%), Gaps = 2/536 (0%)
Strand = Plus / Minus
Query: 5 gaattcttacactatgcccgtgacacttcaccctatatcaatgaatattatgtattctag 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaattcttacactatggaggtgacacttcaccctatatcaatgaatattatgtattctag 680
Query: 65 ataaggacttcatcggctataaaactaaagcccaattatatatggttatttatacaagcc 124
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ataaggaattcattggctataaaactaaagcccaattatatatggttatttatacaagcc 620
Query: 125 aaactggatgatagaggattgtttgttaaaatgccttcagatctgatgtgtctgtgaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaactggatgatagaggattgtttgttaaaatgccttcagatctgatgtgtctgtgaaga 560
Query: 185 aggcttgtgaggccaggattttc-tcctcaggcaaacagataatgcatttgtcacacttg 243
|||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 559 aggcttttgaggccagga-tttcatcctcaggcaaacagataatgcatttgtcacacttg 501
Query: 244 cccaataacgacaaagacatttttgaggttatgtgctgtggtatctcagttttctttata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccaataacgacaaagacatttttgaggttatgtgctgtggtatctcagttttctttata 441
Query: 304 agactgatccccaactttctctggagaccatagttaatcaacatcttttatgggtccatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agactgatccccaactttctctggagaccatagttaatcaacatcttttatgggtccatc 381
Query: 364 tgcctaccacgccccatgatattctctccaaattttaacagttgttcaaacataagagaa 423
||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 tgcctaccatgtttcatgatattctctccaaattttaatagttgttcaaacataagagaa 321
Query: 424 ccaaagagcaattggctaaacttacagccttgttgtgatatgaaggagtgcaggctgatg 483
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct: 320 ccaaagagcaattggctaaacttacagccttgttgtgatatgaaggactgcatgctgacg 261
Query: 484 ggagctgtatggtgtctcaggggaatatttacaaagtacttttcatcccctaaaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggagctgtatggtgtctcaggggaatatttacaaagtacttttcatcccctaaaat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_j16.g1 MSMg01no386_j16.g1 CHROMAT_FILE:
MSMg01no386_j16.g1 PHD_FILE: MSMg01no386_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:27 2005
(677 letters)
>mm_chr10_124308924_124310000
Length = 1077
Score = 1309 bits (677), Expect = 0.0
Identities = 677/677 (100%)
Strand = Plus / Plus
Query: 1 atcatccagcactgaaaatgtcatataaaattcatatccatagctgtttacagacagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatccagcactgaaaatgtcatataaaattcatatccatagctgtttacagacagaga 260
Query: 61 aaaagaacagttgcactctgcaatcctggagcaattctctaaaacatgagaatgatatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagaacagttgcactctgcaatcctggagcaattctctaaaacatgagaatgatatgg 320
Query: 121 cctgctctgtcttctttcacacttatttttgggatccagagctacatcccagggctgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgctctgtcttctttcacacttatttttgggatccagagctacatcccagggctgtat 380
Query: 181 tgattttcattctggctgcagttgatcaatgccctgggaagcagtcatgtgcattaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattttcattctggctgcagttgatcaatgccctgggaagcagtcatgtgcattaggat 440
Query: 241 agagccaaatagaaataccagtgcattttcgcaagtcaaagtgaggtggagggagcaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagccaaatagaaataccagtgcattttcgcaagtcaaagtgaggtggagggagcaggc 500
Query: 301 aaaccagcccacttagtggtttcatctggcaatgcatgcacacaataaaacacactggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaccagcccacttagtggtttcatctggcaatgcatgcacacaataaaacacactggtg 560
Query: 361 aatctgacagccacacagcctggttaacaggaagtctcacactgcattccacacttgcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatctgacagccacacagcctggttaacaggaagtctcacactgcattccacacttgcta 620
Query: 421 ctattattgacctgttagtatcttctgaaaaccatacgatactgtcattctgtggatata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctattattgacctgttagtatcttctgaaaaccatacgatactgtcattctgtggatata 680
Query: 481 tttatgatgctataatttatatttatttattcatttaagatttaatgtctaggttaagta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttatgatgctataatttatatttatttattcatttaagatttaatgtctaggttaagta 740
Query: 541 tgttcactatgtaaatttccttcttagaaggtacctttgttaggaaacgctttgccttga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgttcactatgtaaatttccttcttagaaggtacctttgttaggaaacgctttgccttga 800
Query: 601 taagaatctctcactcattgcaggaaaacagcagttgtaaccactgaaggctgactggat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taagaatctctcactcattgcaggaaaacagcagttgtaaccactgaaggctgactggat 860
Query: 661 tgtataacatttgtcct 677
|||||||||||||||||
Sbjct: 861 tgtataacatttgtcct 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
