Query= MSMg01no386_k18.b1 MSMg01no386_k18.b1 CHROMAT_FILE:
MSMg01no386_k18.b1 PHD_FILE: MSMg01no386_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:32 2005
(574 letters)
>mm_chr10_41752392_41753365
Length = 974
Score = 988 bits (511), Expect = 0.0
Identities = 570/615 (92%), Gaps = 42/615 (6%)
Strand = Plus / Plus
Query: 1 caaccccattcccctcatgcaatattaaatgacctggtccacgtctggagatacatctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccccattcccctcatgcaatattaaatgacctggtccacgtctggagatacatctaa 260
Query: 61 caacaaaatgatattaaattacatctatcatggggtataggct-tttgggtgccaaggtc 119
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 caacaaaatgatattaaattacatctatcatggggtataggctctttgggtgccaaggtc 320
Query: 120 ttcggtggaaatgcttgcagagagagtagggcgggtttccagagaaagggtgcttgagca 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcggtggaaatgcttgcggagagagtagggcgggtttccagagaaagggtgcttgagca 380
Query: 180 cgggaagggaagctgagtttggccccaaggaagaactccccagacctgccttattctgtc 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cgggaagggaagctgagtttggccccagggaagaactccccagacctgccttattctgtc 440
Query: 240 tccaccagtggtactctgcgatgtactgtggagagctcacatccttggcattttgtcacg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaccagtggtactctgcgatgtactgtggagagctcacatccttggcattttgtcacg 500
Query: 300 tcacacgtctggtcctctgcggtcagagacacaatgctttgcgtacccggcttcatttcg 359
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tcacacgtctggtcctctgcg-tcagagacacaatgctttgcgtacccggtttcatttcg 559
Query: 360 ccttgcagaacttccggtggcgagcaagagtctctctagttggaaccagaaggagatttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccttgcagaacttccggtggcgagcaagagtctctctagttggaaccagaaggagatttg 619
Query: 420 tttagggacaaatcccctagttttgactcccctaagagtctagaaaacgggctcgatggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttagggacaaatcccctagttttgactcccctaagagtctagaaaacgggctcgatggt 679
Query: 480 cgcttaaagcagaactgtacgcaaactgcccaacttgagcacaccactgt---------- 529
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cgcttaaagcagaactgtacgcaaactgcccaacttgagcacaccactgtttacaaggta 739
Query: 530 --------gcg----------------------gaccctcgctctctctacattgctctt 559
||| |||||||||||||||||||||||||||
Sbjct: 740 gatgcagtgcgcatgtcagcactcacttgtgcagaccctcgctctctctacattgctctt 799
Query: 560 ccacgttcgccagag 574
|||||||||||||||
Sbjct: 800 ccacgttcgccagag 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_k18.g1 MSMg01no386_k18.g1 CHROMAT_FILE:
MSMg01no386_k18.g1 PHD_FILE: MSMg01no386_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:32 2005
(687 letters)
>mm_chr10_41928770_41929859
Length = 1090
Score = 1139 bits (589), Expect = 0.0
Identities = 634/651 (97%), Gaps = 8/651 (1%)
Strand = Plus / Minus
Query: 42 ttcagttccccaactgctgtgattaccagctggcaacagtgcggtttgcattcagttccc 101
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1090 ttcagttccccaactgctgtgattaccagctggcaacagtgcggtttgca-tcagttccc 1032
Query: 102 tccagtgcgggcagggaggagtggaaggtgctgttaagcaaataggctcgagttgatgac 161
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1031 tccagtgcgggcagggaggagtggaaggtgctgttaagcaaataggctcgagttgacaac 972
Query: 162 tacacatttcttatgcatgcagagccctgagctagggctcctaagtcttttataataggc 221
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 971 tacacatttcttatgcatgcagagccctgagctagggctcctaagtcttttgtaataggc 912
Query: 222 agtgaac--atctccctgctctcgcaggatacgtctcaggctgctaacaatacacacaca 279
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 911 agtgaacatatctccctgctctcgcaggagacgtctcaggctgctaacaatacacacaca 852
Query: 280 gtttt-ctt---tgatgatccagatcagagttgctggaatttgtttgcaagacttgcgaa 335
||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 851 gttttccttgaatgatgatccagatcagagtt-ctggaatttgtttgcaagacttgtgaa 793
Query: 336 gacgaggtttctgggggtggcgggatgatcttctggactcggttgttatggtttttttaa 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gacgaggtttctgggggtggcgggatgatcttctggactcggttgttatggtttttttaa 733
Query: 396 ggtgatacccttgcttctctgcccacaatcgccatcaggtcttggccatccttcttactt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggtgatacccttgcttctctgcccacaatcgccatcaggtcttggccatccttcttactt 673
Query: 456 ggacatatgcatactctgcagagcatatacatttctgcacaacagctaataatatggaat 515
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 672 ggacatatgtatactctgcagaacatatacatttctgcacaacagctaataatatggaat 613
Query: 516 ggggtaaagttaccaaaaccgcctcagtggtctgtgttcctgtgtggttgcttttcttct 575
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggggtaaagttgccaaaaccgcctcagtggtctgtgttcctgtgtggttgcttttcttct 553
Query: 576 tttgtcttgatggagggggactaaagagttggtatcttaccctttcactcatgtagtgat 635
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 552 tttgtcttgatggagggggactaaagagttggtatcttacccttccactcatgtagtgat 493
Query: 636 ttgttaaactcaggatttggtcatgctgtgagttcaatacatttcccatta 686
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttgttaaactcaggatttggtcatgctgtgagttcaatacatttcccatta 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1090
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1080
Effective search space: 731160
Effective search space used: 731160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
