BAC Information

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BAC

Clone NameMSMg01-386N16
Chromosome10 (Build37)
Map Location 61,411,609 - 61,412,082
singlet/doubletsinglet
Overlap geneCol13a1
Upstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284
Downstream geneEG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386N16.T7 (MSMg01no386_n16.b1)MSMg01-386N16.TJ (MSMg01no386_n16.g1)
ACCAG489725AG489726
length745745
length of high quality
(start - end)
474 (71 - 544)245 (373 - 617)
definitionCHROMAT_FILE: MSMg01no386_n16.b1 PHD_FILE: MSMg01no386_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:45 2005CHROMAT_FILE: MSMg01no386_n16.g1 PHD_FILE: MSMg01no386_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:45 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXNATGCAAAAACACCGCGGAA
TTCCTACGTTTTACGAAAAGCCATTTTGCCCCACAACTGAGGAAGGGCCT
GCACCCGTCAGGATTCCACAAGTGTGTGTCACACATTTACCTGCCGGAAG
CTGCCTTAGACCCTGCAGTGTGAGGGCAGAAATTATGGCCAGTGCAGAGT
GAGTTCTCTCCTGCTACCCACTCACCCAAACCCACCAGGACACAACAGGA
GTGCATGGCTGGACTCCGCCTGGCTTTGAACTCTTGGAGCTCTAAGCTGC
CTGTGAGCAGCAATGTCTATTTATCCAGGCCTGCCTGTGCATAGAGTGGA
TCCAGGAGATGCTCGATGCTTCCTGGTGGCAGGCACTCAGACAGTCCTTC
TCGTGCTCAACACCCCCCACAATGTACTAATCAGAGGCAGAGGTATGCCC
TTTTAAGTGTGTGTAGGTGTTTTGCCTGTACATCTGCCTATCATGTTTGT
GATGGTTTGTATATGCTTGGTCCAAGGAGTGGCAGGTGTGTCACTGTGGG
CGTGGGCTTTAAGACCCTCATCCGAGCTGCCTGGAAGCCAGTCTTCCATT
ATCAGCGTTCACATGAAGATGTAGAACTCTCAGCTCTGCCTGCACCATGC
CTGTCTGTATGCTGCCATGCTTCCTGCCTTGATGATAATGCATTGAACCT
CTGTATCTGTAAGCCAACCTCGATGACACGTTGTTCTTTATGAGA
TXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTCACCGGAGGNGACACTAT
AGAAGGTAACGAGCACACTCATCTCTCATCTTCGGCACACAGATAAATAA
GTGCACAAATAAATGTGACAAACAGTTGCTAAAAACAAGAAAAAGGAAGA
AATCTCGCCAGGCAGCAGTGGCTGCACGCCTTTAATCCCAGCACTTGGGA
GGCAGAGGCAGGTAGATGTTTACAAATTTGAGGCCAGCCTGGTCTACTTA
GTTCCAACCAAGGTTACAGAGAGAAACCCTGTCTCAAAAAACAAACAAAA
AAGTAAAGAAAAAATACCTTTTTTCAAAGCAGTTACACTTCTTCCAAAAG
GTATTTATCTATGTTACCCCTTTAAACAAAAAACAATTTTTTTAATGAGT
ATGAGTGTTTTGCCCACATATGCACCATGTTCATACAGTCCCTACAGAGG
CCAGGAGAGAACGTCAGATCCCCTGGGACTGGAATTACAGTTCTGTGAGC
TGCCATGTGGGTGCTAGGAGTTGGACCTAGGAGCTGTGGAAGAGCACCCT
TAACCACTGAGCCATCTCTCCAACCCCCTTAATTTGTTCTTTTTGAGACA
GGGTTTTGGTGTGTGTGCGTGTGTGTGTGTTCCCCCCCAATACTCCTTTT
TTTTTTTTTCCATTACATAACCATACTTCCCGCTTTCAACTCCCATTTTT
ACCCTCCCCGTCGCCCCGCCTCATTATTTTCCCTATTCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_n16.b1 MSMg01no386_n16.b1 CHROMAT_FILE:
MSMg01no386_n16.b1 PHD_FILE: MSMg01no386_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:45 2005
         (474 letters)



>mm_chr10_61411457_61412330
          Length = 874

 Score =  803 bits (415), Expect = 0.0
 Identities = 459/479 (95%), Gaps = 10/479 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattttgccccacaactgaggaagggcctgcacccgtcaggattccacaagtgtgtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccattttgccccacaactgaggaagggcctgcacccgtcaggattccacaagtgtgtgtc 567

                                                                       
Query: 61  acacatttacctgccggaagctgccttagaccctgcagtgtgagggcagaaattatggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acacatttacctgccggaagctgccttagaccctgcagtgtgagggcagaaattatggcc 507

                                                                       
Query: 121 agtgcagagtgagttctctcctgctacccactcacccaaacccaccaggacacaacagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtgcagagtgagttctctcctgctacccactcacccaaacccaccaggacacaacagga 447

                                                                       
Query: 181 gtgcatggctggactccgcctggctttgaactcttggagctctaagctgcctgtgagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtgcatggctggactccgcctggctttgaactcttggagctctaagctgcctgtgagcag 387

                                                                       
Query: 241 caatgtctatttatccaggcctgcctgtgcatagagtggatccaggagatgctcgatgct 300
           ||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 386 caatgccaaattatccaggcctgcctgtgcatagagtggatccaggagatgcttgatgct 327

                                                                       
Query: 301 tcctggtggcaggcactcagacagtccttctcgtgctcaaca-----ccccccacaatgt 355
           ||||||||||||||||||||||||||||||| ||||||||||     |     | |||||
Sbjct: 326 tcctggtggcaggcactcagacagtccttcttgtgctcaacagggttc-----agaatgt 272

                                                                       
Query: 356 actaatcagaggcagaggtatgcccttttaagtgtgtgtaggtgttttgcctgtacatct 415
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 271 actaatcagaggcagaggtatgcctttttaagtgtgtataggtgttttgcctgtacatct 212

                                                                      
Query: 416 gcctatcatgtttgtgatggtttgtatatgcttggtccaaggagtggcaggtgtgtcac 474
           ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 211 gcctatcatgtgtgtgatggtttgtatatgcttggcccaaggagtggcaggtgtgtcac 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)