BAC Information

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BAC

Clone NameMSMg01-387I13
Chromosome10 (Build37)
Map Location 14,461,386 - 14,461,818
singlet/doubletsinglet
Overlap genenone
Upstream geneAig1, EG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik
Downstream geneEG666904, Nmbr, LOC666917, LOC637043, LOC100039492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387I13.T7 (MSMg01no387_i13.b1)MSMg01-387I13.TJ (MSMg01no387_i13.g1)
ACCAG490244AG490245
length731804
length of high quality
(start - end)
408 (51 - 458)434 (76 - 509)
definitionCHROMAT_FILE: MSMg01no387_i13.b1 PHD_FILE: MSMg01no387_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:36 2005CHROMAT_FILE: MSMg01no387_i13.g1 PHD_FILE: MSMg01no387_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTACAGAATTTACAGCAAGCAAGACTCTATTTTTTTTTTAATTTA
TTCACATTTCATCTTGATTGCCATCCCTCCTTCCACTTCCCCCTACCCCA
CCTAAGCCCCTTAGCCTCTGGGAGAGTGGGTATTTCCCCTAGCCTGGTAC
ATCAAGTCTCTTCAGGGCTAGGTGAATCTTCTGATGCTAGCCAGGGCAGC
TCAGCTAAAAGAGCATATCCCATAGACAGGAAACAGCTTTTAAGGTAAAC
CCCACTCCAGTTGTTTGGGACCCACCTGAAGACTGAGTTGCACATCAGTT
ACCTATGTGTCAGGTGCCTAGGTCCAGCCCTTGTATGCACTCTGGTAGGT
GGTTCAGAAGGCCAACAGTCAATAACTTATTCTTTTTTTTAATTAGGTAT
TTTCTTCATTTACATTTCCAGTGCTATCCCAAAAGTCCTCCATAACCTCC
CCCACGCACTCCCCTACCCACCCACTCCCAATTCTTGGCCCTGGCTTTCC
TCTATACTGAGGCATATAAAGTTTGCACGACCAATGGGTCTCTCTTTCCA
CTGATGGTCGACTAGGCCATCTTTTGATACATATGCCGCTAGAGACACGA
GCTCTCGGAGGTACTGGTTACTCCCCATTGGTGCCCTCCCCCCCGGCTCC
CTAACACCTTCCACTCTCCGGCCGTTCTCTG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAGACGAGGGAACAGAAATATGG
TAAGAGACAAAGACCAGGATATCTGCTCAAGTATAGTAGGAAAGCCACAC
CCATGAAATATTGACAATATGGTCACCTGAAAAAAAAGGGCTGCACATGA
CTCCACCAGTTCCCATCCTGATATAGAAGTGACGTGTCAAAAGGCCCTAT
GCACAAATGAGGAGCAAGGAGAAATTAACAGATTCATCTCTAAGAAAGAA
GTCCACTGATAGAATAGTCAATCCTCTTAAGTGATGGAAATTCTCAAAAC
AAAATGAAATGTATAAAGGAAATATATGCCCTAAACAATGCATTATAGAT
TTTACTTACATTTTCTCTCAATATAAATAGGTAATTCTATTGTCATTGTT
GGTGTTTTTCATTTATCATATAATTATACACACTTATATTATATAACAAC
TTTTTGTTGAACAAATGCATTGAGTATGAAAAATGGCTAAAGAAAATTCC
TCACGTTGGAAGCAACTGACAGCCATCCAAATTTCCATGGATTAATATAA
CAAAAACCGTAAATATGCAGTTCCTCCTACTCCTCCCCANTTTCCTTTTA
AAAGATTATCAAAATCTAAAAATTTCCCTCTTGTTTTATTAAGGCTGGGA
CCATTTGGCATGGAAAGGTTTTTATTATCCCCTCTCCCCAAATGGGGCCC
CTGCCCTATATAAAAGGCCCCCCCAATTTTTATGGTTGGGCCTCCCTACA
TAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_i13.g1 MSMg01no387_i13.g1 CHROMAT_FILE:
MSMg01no387_i13.g1 PHD_FILE: MSMg01no387_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:37 2005
         (434 letters)



>mm_chr10_14461186_14462018
          Length = 833

 Score =  816 bits (422), Expect = 0.0
 Identities = 431/434 (99%), Gaps = 1/434 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagacgagggaacagaaatatggtaagagacaaagaccaggatatctgctcaagtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cagagacgagggaacagaaatatggtaagagacaaagaccaggatatctgctcaagtata 574

                                                                       
Query: 61  gtaggaaagccacacccatgaaatattgacaatatggtcacctgaaaaaaaagggctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gtaggaaagccacacccatgaaatattgacaatatggtcacctgaaaaaaaagggctgca 514

                                                                       
Query: 121 catgactccaccagttcccatcctgatatagaagtgacgtgtcaaaaggccctatgcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 catgactccaccagttcccatcctgatatagaagtgacgtgtcaaaaggccctatgcaca 454

                                                                       
Query: 181 aatgaggagcaaggagaaattaacagattcatctctaagaaagaagtccactgatagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatgaggagcaaggagaaattaacagattcatctctaagaaagaagtccactgatagaat 394

                                                                       
Query: 241 agtcaatcctcttaagtgatggaaattctcaaaacaaaatgaaatgtataaaggaaatat 300
           ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agtcaatcc-cagaagtgatggaaattctcaaaacaaaatgaaatgtataaaggaaatat 335

                                                                       
Query: 301 atgccctaaacaatgcattatagattttacttacattttctctcaatataaataggtaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atgccctaaacaatgcattatagattttacttacattttctctcaatataaataggtaat 275

                                                                       
Query: 361 tctattgtcattgttggtgtttttcatttatcatataattatacacacttatattatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tctattgtcattgttggtgtttttcatttatcatataattatacacacttatattatata 215

                         
Query: 421 acaactttttgttg 434
           ||||||||||||||
Sbjct: 214 acaactttttgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 833
Length adjustment: 9
Effective length of query: 425
Effective length of database: 824
Effective search space:   350200
Effective search space used:   350200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)