BAC Information

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BAC

Clone NameMSMg01-387J16
Chromosome10 (Build37)
Map Location 109,850,849 - 109,979,961
singlet/doubletdoublet
Overlap geneLOC100042506, LOC100042510, LOC667855
Upstream geneNav3, LOC100042497, LOC100042502
Downstream gene9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387J16.T7 (MSMg01no387_j16.b1)MSMg01-387J16.TJ (MSMg01no387_j16.g1)
ACCAG490298AG490299
length787846
length of high quality
(start - end)
370 (45 - 414)309 (77 - 385)
definitionCHROMAT_FILE: MSMg01no387_j16.b1 PHD_FILE: MSMg01no387_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:42 2005CHROMAT_FILE: MSMg01no387_j16.g1 PHD_FILE: MSMg01no387_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,979,598 - 109,979,961)(109,850,849 - 109,851,157)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATCTATTTGTGAACAATGCTAAGGCCCGGTGGAGCCTTCCCTT
AGAAGAAATGTACAAAGCTGGAGGCTCATAAGCAATCTCGCAGGTCATTA
GTCACACATGGAAGATAGAGGGCTCCTTCTATTCTTTCCTTCTTTCGTTT
TTCTTTCTTTCTCCCTTCCTTTTGTATACAGAAGAAATTACCCTTAGAGT
TCTTTGAGAATCAGTCTCCCATCTGCACTAAAACACACACACTGAAAAGG
ATTTTCAAGGGAACTTATTGAGGATGTAAGTAAATTGAATTCTTGCTAGG
TCTTAAAGCTTTATTATTTAAAGCGTGATGGGGATGTTGGGCGGAAACTC
TCTTATACTTGTCTCTTCTAAAGGTGTCGCAGTCAAAATTGTAACCTGCT
TGTTTTGTGCGTAATGGGGTCAAGCTCACCATATGAATGTACTTGCGTGT
GCCCATGAATTTACCCCGCCTCCCGCCTACTTTTAGCGTCGCCTAAATGA
CACTTCAATTACTCCGTCACTCGCTCACCGGTCTCGCGCTTTGGGTCGCA
TTCCCCGACCACCACCCTTTTCCCCTTACCCTACTATGCTATCCGCCTCT
TACGCCATGCCTCCTCCTCTTATCCCGTCTTCACATGTTTGATAACCCTG
CCGTCCTTCCCAACCGCCCTTTTTTTCCCTTACTTCCCCCCCATCCCGTC
TCCTCGCTATCCCTCTTCTTCCCTACCTGTTCCCATT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTCACATCCCCACTTGTTAC
ACTTTATGACCCGATGGGTTTAACCAGGGAAAACTAAAAGGCAGTACCCG
GAAATCTTTGGACTTGTCCTAACTTGGAGGGGTTATTCAATGGAGCCTGG
TAGGTTCAAAAGTGGGTACACACCTCAAGACACTGACTGCCCCCTCTCCC
AAAATCTCCCAATTGCCAATTAAAATATCAAGCATGTGTCCATGCAATAA
TGATTAGTGAAAAAAAGAGGCCGTGAATTTGAAGATGTGGAGAGAGAATT
TGAGGGGAAAGGAGAAGTGATGTAATTGAATTATAATCTCAGAACATGCC
TCCAATTTTAAACTTTTACCACAACGTAAAGTTTCTTCTCGTCTTCCCCA
TATTTGTATTCATCCCCCAGCCCATCGTCTTCTACTTTTTTCTTTCCCCC
TCGAATGCTTTTCACTGAGTACTTATTGTACACGCCCTCTTCCCCTTTCT
TATTTTTATGCCCTCCCCCTGTCTCTTCTTTTGTTTTATACCTGTTCGTC
TTTTCGCCCTTTTTCCTGTGCCCCTTTCCTTCTCCCCTTTTCTTTTCTAT
TTCCTCTTCCCCTTTTTTCTTCTCCCCACCTCGCCCTTTTTTCGCCCATC
TCGCTTTTTTCTTTCCCTCTCTTCATCGTTGCCGTCCCTCGTCTTCTCGC
GCTGTCTCCTTTCGTTCTTTTTCCTCTCCCTTATCCCTTCCTCCTTCTTC
TGACTCTGATATTCTTTATGCCTGTATATCCTTCCTCGCTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_j16.b1 MSMg01no387_j16.b1 CHROMAT_FILE:
MSMg01no387_j16.b1 PHD_FILE: MSMg01no387_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:42 2005
         (370 letters)



>mm_chr10_109979220_109979989
          Length = 770

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattatctatttgtgaacaatgctaaggcccggtggagccttcccttagaagaaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaattcattatctatctgtgaacaatgctaaggcccggtggagccttcccttagaagaaa 683

                                                                       
Query: 65  tgtacaaagctggaggctcataagcaatctcgcaggtcattagtcacacatggaagatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgtacaaagctggaggctcataagcaatctcgcaggtcattagtcacacatggaagatag 623

                                                                       
Query: 125 agggctccttctattctttccttctttcgtttttctttctttctcccttccttttgtata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agggctccttctattctttccttctttcgtttttctttctttctcccttccttttgtata 563

                                                                       
Query: 185 cagaagaaattacccttagagttctttgagaatcagtctcccatctgcactaaaacacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cagaagaaattacccttagagttctttgagaatcagtctcccatctgcactaaaacacac 503

                                                                       
Query: 245 acactgaaaaggattttcaagggaacttattgaggatgtaagtaaattgaattcttgcta 304
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 502 acactgaaaaggattttcaagggaacttattgaggaagcaagtaaattgaattcttgcta 443

                                                                       
Query: 305 ggtcttaaagctttattatttaaagcgtgatggggatgttgggcggaaactctcttatac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggtcttaaagctttattatttaaagcgtgatggggatgttgggcggaaactctcttatac 383

               
Query: 365 ttgt 368
           ||||
Sbjct: 382 ttgt 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no387_j16.g1 MSMg01no387_j16.g1 CHROMAT_FILE:
MSMg01no387_j16.g1 PHD_FILE: MSMg01no387_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:42 2005
         (309 letters)



>mm_chr10_109850649_109851357
          Length = 709

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctcacatccccacttgttacactttatgacccgatgggtttaaccagggaaaacta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctttctcacatccccacttgttacactttatgacccgatgggtttaaccaggtaaaacta 260

                                                                       
Query: 61  aaaggcagtacccggaaatctttggacttgtcctaacttggaggggttattcaatggagc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggcagtacccagaaatctttggacttgtcctaacttggaggggttattcaatggagc 320

                                                                       
Query: 121 ctggtaggttcaaaagtgggtacacacctcaagacactgactgccccctctcccaaaatc 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctggtaggttcaaaagtgggtacacacctgaagacactgactgccccctctcccaaaatc 380

                                                                       
Query: 181 tcccaattgccaattaaaatatcaagcatgtgtccatgcaataatgattagtgaaaaaaa 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccaattaccaattaaaatatcaagcatgtgtccatgcaataatgattagtgaaaaaaa 440

                                                                       
Query: 241 gaggccgtgaatttgaagatgtggagagagaatttgaggggaaaggagaagtgatgtaat 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggccatgaatttgaagatgtggagagagaatttgaggggaaaggagaagtgatgtaat 500

                    
Query: 301 tgaattata 309
           |||||||||
Sbjct: 501 tgaattata 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)