BAC Information

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BAC

Clone NameMSMg01-387J20
Chromosome10 (Build37)
Map Location 129,308,545 - 129,309,016
singlet/doubletsinglet
Overlap genenone
Upstream gene1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813
Downstream geneOlfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387J20.T7 (MSMg01no387_j20.b1)MSMg01-387J20.TJ (MSMg01no387_j20.g1)
ACCAG490306AG490307
length821797
length of high quality
(start - end)		224 (66 - 289)475 (76 - 550)
definitionCHROMAT_FILE: MSMg01no387_j20.b1 PHD_FILE: MSMg01no387_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:43 2005CHROMAT_FILE: MSMg01no387_j20.g1 PHD_FILE: MSMg01no387_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCC
TGATTTGATCTTAGGAAGAAAGATATAGCAGATGGTTTTAGTTGGCTTGC
TGGAAATATGAAATAAAGTTAGAATCAAGAATAGAATGTGTCCATTGCTC
ATAATATTCAGTAAATGTTGTTTAATAAGAAATACAATGAAGTTTCATAC
TTACATCAAAAAGAGTTTATATTTCTTAAAATCCTTGCCAAATATCTTAC
AAGGTATTATCAAAATAAAGAGAAATTGAGGAAAATTCACAATCCTACAG
CAATATTAACCTTAAGTCAAAACTGTCTTGACGTAACATAGTTTATCGAT
CTTGTGGATAGTATGCTTTACATATTCACTGCTGCATTTTCTAAAAAATC
AATGTCCAAATACTCAATACTATACTTGTATTTGATATTTTCTCTTAATT
CGTAATCTGACATATACCCTGTTCACACTTCTATATTACTATTTATTTCC
TCCCCCCTTTTTATTGTACTCCTCTTCGCCCTTCCCTCCCTTTTTCCTAT
GCCCCCCTCCTCCTTCTTATTTCCCTCCCAATTATCCCTCCTTTTCCTCC
CTTTTTCTTTCCCTCTCCCTTCCTTTCCTGCCTTCCTTCCCATTTTTCCC
CCCTCCCCTCCTCTTGCCCCCTTTTCCCCGTTCTTTATTCCCCCTTCCTA
TCCTCCTTCCCTCCCCTTCTCTTCCCCCCCCTTTTCTCTTTTTTCTTTTT
CTCCCCTCCTTTCCCCTTTTCCTTATTTTCCTCCCTCTTTTTCTCTTTCG
TTCTGTCTTCCCATTTTTTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCAGTGTTCTTGTTGCCAAATATA
TTTGTACTGAATGGAGATTATTTAAAAACACAAACTGTATAATGCTATCT
GTATGTGTTTCATCCTGACTTTGGAAACTGGACAACATATTGGTGTGATC
TAAACAATAATAAAATAATAAAAAATAAAAAACACAACCTGAATTAAAAA
AATTTCATAAACCGGGCAGTGGTGGTTCACGCCGTTAATCCCAGCATTTG
TGAAGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTATACAG
AGTGAGTTCCAGGACAGCCAGGGCTACATAGAGAAACCATATTTCAATAA
AACAACAACAACAACAACAACAATAATAATAATAATAATAATAATAATTT
TCATGATATTTGCAATATAGTTAAGGACCTCACTCAAGAATTTGGGTCAA
ATGAGAATGGAAAGAACTAAGGAAATATTGATGGGGAATGTAAATGTTAT
AAAGGTAAAATACCTGGATAAGAATATAATAGCTACCAAATATCATCCCT
CTTCCCCCAAAAAAAGCCTACAAAATATTAAGTAATCCTTTTGTCTAAAA
AAACAGTTCCTTGTTCCCCTTTTGAGATTCCTACCAAAACTCCTTAATCA
CTGGGGAAATTATTCAATTTTTTTTCTTATTGCCCCTTCTCCCACTNCTC
ATTAAAATATTTTCCTTATTTTTAACCTTTATTCACTATTATACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_j20.g1 MSMg01no387_j20.g1 CHROMAT_FILE:
MSMg01no387_j20.g1 PHD_FILE: MSMg01no387_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:43 2005
         (475 letters)



>mm_chr10_129308345_129309219
          Length = 875

 Score =  895 bits (463), Expect = 0.0
 Identities = 471/475 (99%), Gaps = 3/475 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagtgttcttgttgccaaatatatttgtactgaatggagattatttaaaaacacaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagtgttcttgttgccaaatatatttgtactgaatggagattatttaaaaacacaaac 260

                                                                       
Query: 61  tgtataatgctatctgtatgtgtttcatcctgactttggaaactggacaacatattggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtataatgctatctgtatgtgtttcatcctgactttggaaactggacaacatattggtg 320

                                                                       
Query: 121 tgatctaaacaataataaaataataaaaaataaaaaacacaacctgaattaaaaaaattt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatctaaacaataattaaataataaaaaataaaaaacacaacctgaattaaaaaaattt 380

                                                                       
Query: 181 cataaaccgggcagtggtggttcacgccgttaatcccagcatttgtgaagcagaggcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataaaccgggcagtggtggttcacgccgttaatcccagcatttgtgaagcagaggcagg 440

                                                                       
Query: 241 cagatttctgagtttgaggccagcctggtatacagagtgagttccaggacagccagggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagatttctgagtttgaggccagcctggtatacagagtgagttccaggacagccagggct 500

                                                                       
Query: 301 acatagagaaaccatatttcaataaaacaacaacaacaacaacaacaataataataataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatagagaaaccatatttcaataaaacaacaacaacaacaacaacaataataataataa 560

                                                                       
Query: 361 taataataataattttcatgatatttgcaatatagttaaggacctcactcaagaatttgg 420
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taataataat---tttcatgatatttgcaatatagttaaggacctcactcaagaatttgg 617

                                                                  
Query: 421 gtcaaatgagaatggaaagaactaaggaaatattgatggggaatgtaaatgttat 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtcaaatgagaatggaaagaactaaggaaatattgatggggaatgtaaatgttat 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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