BAC Information

Click to search

BAC

Clone NameMSMg01-388F15
Chromosome10 (Build37)
Map Location 50,781,021 - 50,781,476
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3, Sim1
Downstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388F15.T7 (MSMg01no388_f15.b1)MSMg01-388F15.TJ (MSMg01no388_f15.g1)
ACCAG490868AG490869
length771769
length of high quality
(start - end)
505 (34 - 538)563 (79 - 641)
definitionCHROMAT_FILE: MSMg01no388_f15.b1 PHD_FILE: MSMg01no388_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:40 2005CHROMAT_FILE: MSMg01no388_f15.g1 PHD_FILE: MSMg01no388_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCCAG
ATTATTTTAAAACTAACTGCAGTTAGAAATTATTTTCGTCCTTCTCCTTA
GAACCCCAGTGAGATATAAAAATAGATTTTTCAAAAAGTTCCAGAAATGA
AACATTGTTCACTGAGAAATCACAATATTATATCTTCATGGTTACAAACA
GCGGCCATTTGCAAACTGTATCCAAATTCAGTTGACCAAAATCCTACTGA
ATCCTTGTAATAAAATTAAAATATAAAAAAAGAAATCAAATTTAGTTTAT
CTGAAATTCCCTCAAATTTTATCTGCAGTCTACTTTTTTAAACATATTTA
AATCTTTCATTTAAATAGTTCATAATTCAGCCATCAGAATTTTAACTCTT
TTGAAGGATCTCAGTTCTGTTCATTTAAACAAATAAGAATTATTCTTTCA
TTTCATCCTATTCTATCTGAAATGATATTTTTATAAAAAACCATGTTGTT
AGGAAAAGATACAAATTTTAAGACTCCAACAATAAATCCTTCACAACCCA
ACTTACTCCATATGAAGGGAAAATATTCTTCATCTTTGTATTAATTGATA
GNTATTGGTCAAGACAACTCACAACATTGTTTCCATACCAGAACAATGCC
TCATATTAAAAGCAAAATTAAATTTCTGAATTGGCATTTGCTTTCAGAAC
TTGTGGTAGGAAGCTACTTTGGGCTTCTGTANNGCCAAAGATATCGCCAA
CAGACCAAGTGCCAGCCCCCA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGCCAGAGCAATTCGACAAC
AAAAGGAAATCAAGGTGATACTAATTGGAAAGGAAGAAGTAAAAATATCA
CTATTTGCAGTTAATGTGATAGTATATATAAGTGACCCCAAAAAATTCTA
CCAGAGAACTCCTAAATATGATAAACAGCTTCAGGGCAGTAGCTGAATAT
AAAATTAACTCAAACAAATCAGTGGCCTTTCTCTACACAAAGGATAAAGA
GGTTGAGAAAGAAATTAGCGAAACAAGACCATTCACAATAGTCATAAATA
ATATAAAATACCTTAGTGTGACTCTAACTAAGGAAGTGAAAGATCTGTAT
GATAAGAACTTCAAGTCTCTGAAGAAAGAAATCGAAGAAGATCTCAGAAG
ATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATTAATATAGTAAAAA
TGGCTATCCTGCCAAAAGCAATCTACAGATTCAATGTAATCCCCATCAAA
ATTTCAACTCAGTTCTTCACTGAGTCAGAAAGGGCAATTTGCAAATTCAT
CTGGAATAACAAAAAATCTAGGATAGCAAAAACTATTCTCCACTATAAAG
GAACCTCTGTTGGAATCACCATGCCTGAACTCAAGCTGTACTACAGAACA
CTTGTGATTAAAACTGCCTGTTACTGGTACGGTGACAGACAGGTAGATGA
ATGGATAGAACTGAACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_f15.b1 MSMg01no388_f15.b1 CHROMAT_FILE:
MSMg01no388_f15.b1 PHD_FILE: MSMg01no388_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:40 2005
         (505 letters)



>mm_chr10_50780573_50781477
          Length = 905

 Score =  843 bits (436), Expect = 0.0
 Identities = 451/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 50  ttttcgtccttctccttagaaccccagtgagatataaaaatagatttttcaaaaagttcc 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ttttcgtccttctccttagaaccccagtgagatataaaaatagatttttcaaaaagttcc 845

                                                                       
Query: 110 agaaatgaaacattgttcactgagaaatcacaatattatatcttcatggttacaaacagc 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 agaaatgaaacattgttcactgagaaatcacaatattatatcttcatggttacaaacagc 785

                                                                       
Query: 170 ggccatttgcaaactgtatccaaattcagttgaccaaaatcctactgaatccttgtaata 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ggccatttgcaaactgtatccaaattcagttgaccaaaatcctactgaatccttgtaata 725

                                                                       
Query: 230 aaattaaaatataaaaaaagaaatcaaatttagtttatctgaaattccctcaaattttat 289
           |||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct: 724 aaattaaaatataaaaaaagaaatcaaatttattttaccttaaattccctcaaattttat 665

                                                                       
Query: 290 ctgcagtctacttttttaaacatatttaaatctttcatttaaatagttcataattcagcc 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctgcagtctacttttttaaacatatttaaatctttcatttaaatagttcataattcagcc 605

                                                                       
Query: 350 atcagaattttaactcttttgaaggatctcagttctgttcatttaaacaaataagaatta 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atcagaattttaactcttttgaaggatctcagttctgttcatttaaacaaataagaatta 545

                                                                       
Query: 410 ttctttcatttcatcctattctatctgaaatgatatttttataaaaaaccatgttgttag 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttctttcatttcatcctattctatctgaaatgatatttttataaaaaaccatgttgttag 485

                                               
Query: 470 gaaaagatacaaattttaagactccaacaataaatc 505
           ||||| |||||||||||||| |||||||||||||||
Sbjct: 484 gaaaatatacaaattttaaggctccaacaataaatc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)