Query= MSMg01no388_g10.b1 MSMg01no388_g10.b1 CHROMAT_FILE:
MSMg01no388_g10.b1 PHD_FILE: MSMg01no388_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:44 2005
(436 letters)
>mm_chr10_124346264_124347100
Length = 837
Score = 727 bits (376), Expect = 0.0
Identities = 419/434 (96%), Gaps = 4/434 (0%)
Strand = Plus / Minus
Query: 5 gaattcataatttttcaagtacatgacaccaatgtatctagaatttagcatttttgtctt 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 579 gaattcataatttttcaagtacatgtcaccaatgtatctagaatttagcatttttgtctt 520
Query: 65 caaa-tttttttacagtactattatggaagtcataactctgagaaagagctgtgtaaatt 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caaattttttttacagtactattatggaagtcataactctgagaaagagctgtgtaaatt 460
Query: 124 tgtctaatgtagaagtaaatggtttgaagatattatataccattaattttaacactacac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgtctaatgtagaagtaaatggtttgaagatattatataccattaattttaacactacac 400
Query: 184 acacttaaaaatccccttgtaccctttgtactcctagactcaatcatgaaacagttctac 243
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 399 acacttaaaaatccccttgtaccctctgtattcctagactcaatcatgaaacagttctac 340
Query: 244 aaagtagtgcacattttcatgtataacatatattcagtttctaaaagtttcaaaatttct 303
|||||| || ||||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 339 aaagtaatgtacattttcatgtataacatgtattcagtttctataagttccaaaatttct 280
Query: 304 tatgatagttattttttgttttttgtttgtatatctctggtgtgatttattcttttttgt 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 279 tatgatagttattttttgttttttgtttgtatatctctggtatgatttattcttttttgt 220
Query: 364 ttctttgtttggttt-gttttgtttttttgagacaaggtttctctgtatagccctggctg 422
|| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 219 ttgtttgttttgttttgttttgttttt--gagacaaggtttctctgtatagccctggctg 162
Query: 423 tcctggaactcact 436
||||||||||||||
Sbjct: 161 tcctggaactcact 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space: 353556
Effective search space used: 353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_g10.g1 MSMg01no388_g10.g1 CHROMAT_FILE:
MSMg01no388_g10.g1 PHD_FILE: MSMg01no388_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:44 2005
(544 letters)
>mm_chr10_124190781_124191724
Length = 944
Score = 843 bits (436), Expect = 0.0
Identities = 515/545 (94%), Gaps = 8/545 (1%)
Strand = Plus / Plus
Query: 1 agcagatggagcaagacttaaatcacaagtacaggggaagtacaggcacgaagttctgaa 60
|||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||
Sbjct: 201 agcagatggagcaagacttaaatcacaagtacaggggaggtgcaggcatgaagttctgaa 260
Query: 61 tttcaaagtctccttctccctcattgagagttccaggctacacgggagatcctgttgaaa 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tttcaaagtctccttctccctcattgagagttccaggctacacaggagatcctgttgaaa 320
Query: 121 aaggaaagggaaatagaagttattttcatctgctacaatagtcttagaataaaatatatt 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaaagggaaatagaagttattttcgtctgctacaatagtcttagaataaaatatatt 380
Query: 181 tcagtttgtgcattctatctggaataatttattcttatttgctgagtctactctctagac 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtttgcacattctatctggaataatttattcttatttgctgagtctactctctagac 440
Query: 241 ctattatgtttatgacaaagcttgtcaatagaatgtcaggggcaattttgtgttatttcg 300
||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
Sbjct: 441 ctaggatgtttatgacaaagcttgtcaatagaaagtcagggtcaattttgtgttattttg 500
Query: 301 gtaacagcatattgtcctcagctgagagggagcgatctgttgagtaatctaggtgtttga 360
|||||||||| |||||||||||||||||||| | |||| ||||| |||||||||||||||
Sbjct: 501 gtaacagcatcttgtcctcagctgagagggaacaatcttttgaggaatctaggtgtttga 560
Query: 361 aagttggccatggtttaaagctactgggattcaatactcttaggcacagaacaccaaaag 420
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 561 aagttggccatggtttaaagctactgggattcaata------ggcaaagaacaccaaaag 614
Query: 421 aaacaaaaaggagagaanacacaaacataaggatcattta-aaaaatattttctttattt 479
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 615 aaacaaaaaggagagaaaacacaaacataaggatcatttttaaaaatattttctttattt 674
Query: 480 acatttcaaatattatacccctttcctggtcccccacccacccagaaacctcctatccca 539
|||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct: 675 acatttcaaatattataccc-tttcctggtcccccacccactcagaaaccttctatccca 733
Query: 540 tcccc 544
|||||
Sbjct: 734 tcccc 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
