Query= MSMg01no388_m01.b1 MSMg01no388_m01.b1 CHROMAT_FILE:
MSMg01no388_m01.b1 PHD_FILE: MSMg01no388_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:09 2005
(191 letters)
>mm_chr18_34014793_34015383
Length = 591
Score = 339 bits (175), Expect = 9e-98
Identities = 187/191 (97%)
Strand = Plus / Minus
Query: 1 ggaaaagctcatagcctgtgcacataacctctaagttagagggtgaaaggtttattttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggaaaagctcatagcctgtgcacataacctctaagttagagggtgaaaggtttattttgg 332
Query: 61 tttgtagtttcagagatttcggttgaaggagagctgggtcattgctttggatccttggta 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tttgtagtttcagagagttcggttgaaggagagctgggtcattgctttggatccttggta 272
Query: 121 gaagcatcgtgaaagtgggagtgtagggtggcgcacactgatgacctcatgctaaagagg 180
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 271 gaagcatcgtgaaagtgggagtatagggcggggcacactgatgacctcatgctaaagagg 212
Query: 181 atgggggcggg 191
|||||||||||
Sbjct: 211 atgggggcggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space: 106689
Effective search space used: 106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no388_m01.g1 MSMg01no388_m01.g1 CHROMAT_FILE:
MSMg01no388_m01.g1 PHD_FILE: MSMg01no388_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:09 2005
(493 letters)
>mm_chr10_18063502_18064389
Length = 888
Score = 783 bits (405), Expect = 0.0
Identities = 465/497 (93%), Gaps = 25/497 (5%)
Strand = Plus / Plus
Query: 1 agaattcagtctttttttttttaattctgaaaaaagttagtttttaaatccttacatatt 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaattcagtcttttttttta-aattctgaaaaaagttagtttttaaatccttacatatt 259
Query: 61 tttgctatatctttgtctgcttgagagcggggacatggcggtggcagtggtggtggtggg 120
||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 260 tttgctatatctttg----cttgagagcggggacatggcggtggcag----------ggg 305
Query: 121 tggctgtttgagaggatgctggccctctggatgggcaggttgatgaggaagcctcttgtt 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 -gactgtttgagaggatgctggccctctggatgggcaggttgatgaggaagcctcttgtg 364
Query: 181 agtggtgaggtcatcctaggctgcagggattctccagaaatgacccctctaatctctttg 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 365 agtggtgaggtcatcctaggctgcaggggttctccagaaatgacccctctaatctctttg 424
Query: 241 ctatctttt----gagacctagctctcagctccccaggaaggcaggctgcagccacagca 296
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctatc----cacggagacctagctctcagctccccaggaaggcaggctgcagccacagca 480
Query: 297 tgtagaaccctactgttcatttgatccctgtatttctgtatgtctcaactgtgtcctctc 356
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 481 tgtagaaccctactgttcatttgatccctgtatttccgtatgtctcatctgtgtcctctc 540
Query: 357 actcaagaaagcctgttttaacatttttagaggatcaatggccaagcttctgccaggatg 416
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 541 actcaagaaagcctgttttaacatttttggaggatcaatggccaagcttctgccaggatg 600
Query: 417 ggaattttggattcgagctgcttctgcggctttgttgttctttgagagagtgtttagtgg 476
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 601 ggaattttggattcgagctgcttctgcggctt-gttgttctttgagagagtgtttagtgg 659
Query: 477 aggccgagcttgccttg 493
|||||||||||||||||
Sbjct: 660 aggccgagcttgccttg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 888
Length adjustment: 10
Effective length of query: 483
Effective length of database: 878
Effective search space: 424074
Effective search space used: 424074
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
