BAC Information

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BAC

Clone NameMSMg01-389B11
Chromosome10 (Build37)
Map Location 74,859,621 - 74,859,862
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh15, EG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707
Downstream geneUpb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389B11.T7 (MSMg01no389_b11.b1)MSMg01-389B11.TJ (MSMg01no389_b11.g1)
ACCAG491429AG491430
length768706
length of high quality
(start - end)
81 (323 - 403)242 (86 - 327)
definitionCHROMAT_FILE: MSMg01no389_b11.b1 PHD_FILE: MSMg01no389_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:35 2005CHROMAT_FILE: MSMg01no389_b11.g1 PHD_FILE: MSMg01no389_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACATCCTGGTAATTTATAAACAATAGAAGTTTACTTAGC
CTGTGGTTCTAACGTGAAGCAGAGGAGGAGCATCTGGTGAGGGCTTTCTT
GCTGCGTCATTGTCTGTATCACATGGCTAGACAGCATGCAAGGGGCAGTC
AGGACTTCCGCGCACCCGGCGAGAGAGAGCCCCGCTGACCCAATCACCCT
TTAAACGGCAGACCTGCTGGGTTTCCCATGCATGTGCTCTGAGAAGACAG
CACTGACCAGGAAGGCAGAACGAAGCATGGTGGGGGCCAACCTGGAGGCA
TTGAAACATCTTTGGTCCAGACCCATCACTTCCTAGCAGTGTGGTCCATT
TGGGAGCTAGGGCACAAATATCCTTGTTATCCTGTCGAAGTGAGGAGGAG
ATGACGCTTGAAAAGAGCGCTGTCCCAGGACTGGTCCCCGTCACCATGAC
TGCCCGTCTGTTGCCGAGCCCCTCCCCTGCGCCATCCGCGTCCCGACATT
TGGCCCCACCTACGCCCAACCACTATATCTATCCACCTATCTATCCACCT
ATCCATCTCCCCACCCATCCATCTATCCATCCACCTATCCAACCATTCAT
CCTTTCCCTACCTGATTGCCCTACCTTCCACCCCTCCCCCTCCCTTCCCT
CACCCAACCTCTCCCCTCCCCTTCTCTCCTCCTATCTCCCCCTCCCCTCC
GCCTTCCCCTTTTCTCCT
CTCNNNNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGATACATTATTA
GTTCAAGGAGGAATTATGTTTATTGTCTGGCCCCCTTAAAGAGATGGCCG
CTTAACCAATTTATAACCTGATACCTGCATGTTGGAGGCAAGGGCCCAAG
ACTCCCGCTGCTAGGCTCAATTCGCTCCCCTGCTGTTGATACAGCTTACT
TGACAGCCTGCCCATCCACCTGTTGGCCCATCTGGACCTGGACCAGCCCC
ACTGTTTCCTGCACTTGACTCATTTCCTGCTTTGGACCCAGTTTGACCTT
TCACCCCGCAGCTGAATTAAGCAGCTTTGTTCTCTGGCTTTGACTTCCCC
CCAGCAGCTCCCCTCCTGGAGCCTGGGCCATTATCTCATCTATACAGACT
CTTTCTCAGCCTGCTTCTGAAACCACCGAGAGCCGTCCCCGCCCTCTCGA
ACGTTTATTTATTCCGGAACCGGGTGGGTGTGGGGTGTTTGTTTTTTTTT
NNNTTCCCTTTTTTCCCCCTTCCTCCCCTTCCCTTTTTTTTTCCTCCCTC
TTTTCCCTCTTTTTTTTCCTTTTTTCCCCCCTCCCTACTTTTCCTTTTTT
TTCCCCCTTCCTCCCACCCCCCCCTNTTTTTCCTTTTTTTCTTTTCTTTT
CCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_b11.g1 MSMg01no389_b11.g1 CHROMAT_FILE:
MSMg01no389_b11.g1 PHD_FILE: MSMg01no389_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:35 2005
         (242 letters)



>mm_chr10_74859421_74860062
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggatacattattagttcaaggaggaattatgtttattgtctggcccccttaaagagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggatacattattagttcaaggaggaattatgtttattgtctggcccccttaaagagat 260

                                                                       
Query: 61  ggccgcttaaccaatttataacctgatacctgcatgttggaggcaagggcccaagactcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccgcttaaccaatttataacctgatacctgcatgttggaggcaagggcccaagactcc 320

                                                                       
Query: 121 cgctgctaggctcaattcgctcccctgctgttgatacagcttacttgacagcctgcccat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgctgctaggctcaattcggtcccctgctgttgatacagcttacttgacagcctgcccat 380

                                                                       
Query: 181 ccacctgttggcccatctggacctggaccagccccactgtttcctgcacttgactcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacctgttggcccatctggacctggaccagccccactgtttcctgcacttgactcattt 440

             
Query: 241 cc 242
           ||
Sbjct: 441 cc 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)