BAC Information

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BAC

Clone NameMSMg01-389I04
Chromosome10 (Build37)
Map Location 94,724,758 - 94,725,129
singlet/doubletsinglet
Overlap geneCradd
Upstream geneEG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
Downstream geneSocs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1, EG432491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389I04.T7 (MSMg01no389_i04.b1)MSMg01-389I04.TJ (MSMg01no389_i04.g1)
ACCAG491749AG491750
length738780
length of high quality
(start - end)
368 (80 - 447)108 (74 - 181)
definitionCHROMAT_FILE: MSMg01no389_i04.b1 PHD_FILE: MSMg01no389_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:08 2005CHROMAT_FILE: MSMg01no389_i04.g1 PHD_FILE: MSMg01no389_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAACAC
CGCGGAATTCCAGGATTTCCTGAGATACATGGTAAGACCCTGTCTCATGG
GGGTAGGGGGAGGAGGCAACAATTATGGAAAATATTGTTACATAAACTCA
AAAAGATGACTAATGAGTAATATCTGATGTCACCAGGGTTTTAAATTTTA
TCTTACAAAAAAAAAAAAGTTAATTCTTAAGATGTTTAAAAGTCACTTTA
AAGGATGAATTAATTCTGTCTGTTGCCACCATCGAAAAACTGTGTCTAGA
GGGGTTTGATACCCAAACTTCAAACCATTTCTACTTCAAAAGCCCTGTCA
CTCAAGCCTTTAACTCTTAGGGACAATACTTGCTACCACTCAGGTGTAAT
TAAGGTTACTGTAAGTCAGCTGACTAAAGACACCGATGAGCTCTTCGGGA
AGGGAACCCGGAACGAGAGGCCAGGATCCGGGCTCCTCCCAAGTGCTATT
GCTGGCTGCGCCCATGACAGGAAGCCGACCTCACAAGAACCCCCCCGCAC
CTAACGACAACATGGGGCGCCCCCACCCCCCCCCAACATCCTCCCGGAAC
TAAATTCCCCCAACCCACTGGACTATGCTCCTACCGATAAAACAGCCTAG
GNCCTGCCGTCCGCCTCTGCCCTTCTGAGCCCCCCGCCCACACACCGCCC
ACCCATTCCCCCCCCCGTCCCACCCCCGTTCCCCATAG
NNCCACATGAAGTGGTAGCCTGGNGNCGCCCGCCTCGTACTCGCNTGAAN
NAAGAAGGATACGACACCCGGTTATGGCAGGTCACAGAAGATGAAGGACT
CTGAATGATATATGGTTCATGGATACCTTTGGGAGGAAGTATTTACAGTT
TTTATAGAGAGAGGGAGAGGGAGAGGGAGAGGGGGAGGCAGANCCCCCGC
CCCCGGNTCCGCCCCCCGGTTCTCTCTTTCCCTTCGGTCCCCTCTTTGTT
TTTCGCNGNGCNNCCCGCGCNNCCCTCCCGCCCGTTNCCNNCCCCCNCCC
NCCCCCCCCCCCCTTTTTGTGNTTTTCNNCCCCCCNNCGCGGGCCGCGNC
GCGGGTTTTTTTTTCCCCCCCCCGGTGGGGGGGGGGGGTCCCCTTCTTCT
CTTTCCCGGTTTCCCCCCCGTTTCTTTTTTACTTTCGATCTCTTCTCCCC
CTCTCTCCCTCCTCCTTTTACTTGCTACCTTCCACTTACTCTTATTCTGT
TTCTTTCTCCGCTTCTCTTGCCTTCCTTTTACCTCTTGTCTAAATGCCTT
CCTTCCTTTTATGCTTTGATCCCCGCCGATTTTTTTGCTAGCCCCTCATC
CCTTCCTCCTCCTCATCTCTCCCTTCCCCTCGCCTTCCTTCTACCACACG
CTCTCTGTCTTTTCTCGCGTACCGCCCTCGTTCTTCTTTGTTTTTTTTCC
CTGATGTCTTCGTTTCCCCTCCCCTAGCTCCTTGACCTATGCTTAGCCCT
GCTGCGTTACCGTTTTCTCGTTTTCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_i04.b1 MSMg01no389_i04.b1 CHROMAT_FILE:
MSMg01no389_i04.b1 PHD_FILE: MSMg01no389_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:08 2005
         (368 letters)



>mm_chr10_94724558_94725332
          Length = 775

 Score =  654 bits (338), Expect = 0.0
 Identities = 361/372 (97%), Gaps = 7/372 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtaagaccctgtctcatgggggtagggggaggaggcaacaattatggaaaatatt--- 57
           ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||   
Sbjct: 201 tggtaaggccctgtctcatgggggtaggggaaggaggcaacaattatggaaaatatttat 260

                                                                       
Query: 58  -gttacataaactcaaaaagatgactaatgagtaatatctgatgtcaccagggttttaaa 116
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tgttacataaactcaaaaagatgactaatgggtaatatctgatgtcaccagggttttaaa 320

                                                                       
Query: 117 ttttatcttacaaaaaaaaaaaa---gttaattcttaagatgtttaaaagtcactttaaa 173
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttatcttacaaaaaaaaaaaaaaagttaattcttaagatgtttaaaagtcactttaaa 380

                                                                       
Query: 174 ggatgaattaattctgtctgttgccaccatcgaaaaactgtgtctagaggggtttgatac 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatgaattaattctgtctgttgccaccatcgaaaaactgtgtctagaggggtttgatac 440

                                                                       
Query: 234 ccaaacttcaaaccatttctacttcaaaagccctgtcactcaagcctttaactcttaggg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaacttcaaaccatttctacttcaaaagccctgtcactcaagcctttaactcttaggg 500

                                                                       
Query: 294 acaatacttgctaccactcaggtgtaattaaggttactgtaagtcagctgactaaagaca 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaatacttgctaccactcaggtgtaattaaggttactgtaagtcagctgactaaagaca 560

                       
Query: 354 ccgatgagctct 365
           ||| ||||||||
Sbjct: 561 ccggtgagctct 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 775
Length adjustment: 9
Effective length of query: 359
Effective length of database: 766
Effective search space:   274994
Effective search space used:   274994
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)