BAC Information

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BAC

Clone NameMSMg01-389K20
Chromosome10 (Build37)
Map Location 128,163,606 - 128,163,961
singlet/doubletsinglet
Overlap geneDgka
Upstream geneTac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si
Downstream geneLOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389K20.T7 (MSMg01no389_k20.b1)MSMg01-389K20.TJ (MSMg01no389_k20.g1)
ACCAG491875AG491876
length763774
length of high quality
(start - end)		365 (43 - 407)420 (82 - 501)
definitionCHROMAT_FILE: MSMg01no389_k20.b1 PHD_FILE: MSMg01no389_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:22 2005CHROMAT_FILE: MSMg01no389_k20.g1 PHD_FILE: MSMg01no389_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTCTCTAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTGGGGAATCCCACCCAGCTTGATAGTCTTGATAGTGGGCACT
TTTATGCACTGAGCCATCTCTCCAGTCCTAACCTAAGACTTGTATATAGA
CCAGTTTTCATCTAATTTCTTCATTTTTCATATTAGGGACTTTGAAATTG
CACATTTGAGTCTTTACTGTGTTATGTCAATGAGACTTTCACGGGGTTCT
GTTTATTCAGCCTGAATCATGAGCACAAGAATATACAGAATGTTGCCAGG
TTAGGTGTAATTTTAGCACTCAGAGGCAGAGGAAGGCAAACCTGAGTTTG
GCACCGTCCGCCCAGACCTATGTATATAGCACGCTCCAGGCCAGCCAGGG
TTACATAGTAAGATCCTGTCACACACATACAGGTTGTATGTGAGCACTGT
GAGATTACTCCTCATATAACAACCTCATGACCTGACCTCCATGTCCAACA
CACTCTTAACGATCGACCGCGAGATCCGACCCCCTGACTCCTGTCTCTCT
GATGTCCAACGCGCTCCACGCTACTCCGCCATGCTTCCCCTCTAACATGC
GTGCGTCCACGCCTGCTCCCCTGCGCCCCTTTCCCTGTTTCCTCACACAC
ACCCCTCCTTTCCCCCTTCCCCCTCCTCTTCCCCCTTTCCCCCCCTCCCT
CCCCCCCCCCTCCCTTACCCCCCTCCTTATTCCCCCCCTTTTCTCCCCCT
TCCTTCCCCTCTC

NNNNTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCCTCTGGCTTCAGC
CTTTCAAGTGCAGGAATTACAGGTGTGAACCACCACACTCAACCATGGTT
TTAAAACTAAGTGTGCATGCGGTGTGTGCTTGTCCACGAGTGTGCATGTG
CATAGCTAGAATAACAGGTGATTGTGAGCTGCTGACTTGGGTGTGCAGAG
AACCAAACTCAGGTCCTTTGAGTGGACAGTTGTGGGAAGCCACATGTGCC
GTTGCAGAGTGGCACTGACTACTGCTGGCCTCCATGCATAAGTTTGGACA
AACAACCAATGTGTACATATGCAGTAAAGTTTTTTGCAAAGACACTCCCT
GGCCCGGGCATGATAATGAGGCTTTGAGAGTATGACCAATCAGATGTGAG
ACATGCAAATGAGGTATGATAATGAGGCTCTGTGAGGTACAGAGAGTAGC
CAATCAGATGAGGAACATGCAAATGAGGCGTAGTGCATAACCAATCTGGG
TGTGAGACACGCCTCTCCTAAGGCTATATAAGCAGCACCAGTTTCTGGGC
TCAGGGTCTCTTCGCCTCTGCAACCAAGCTCTCCCCAAAAAAGTGGGCAA
AAAGATCCCTGTGCACCATAATTCTTGCTTGGCCAATCCCAGGAACGCAA
GAAAAAAGGTGTCTTAATCCCCCGGCGGGAGAACACAATTCTATTATTCC
CAAAAAAAACCAAGGGTCAAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_k20.b1 MSMg01no389_k20.b1 CHROMAT_FILE:
MSMg01no389_k20.b1 PHD_FILE: MSMg01no389_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:22 2005
         (365 letters)



>mm_chr10_128163420_128164184
          Length = 765

 Score =  658 bits (340), Expect = 0.0
 Identities = 352/356 (98%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaattctggggaatcccacccagcttgatagtcttgatagtgggcacttttatgcactg 69
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggaattctggggaatcaaacccagcttgatagtcttgatagtgggcacttttatgcactg 483

                                                                       
Query: 70  agccatctctccagtcctaacctaagacttgtatatagaccagttttcatctaatttctt 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agccatctctccagtcctaacctaagacttgtatatagaccagttttcatctaatttctt 423

                                                                       
Query: 130 catttttcatattagggactttgaaattgcacatttgagtctttactgtgttatgtcaat 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 catttttcatattagggactttgaaattgcacatttgagtctttactgtgttatgtcaat 363

                                                                       
Query: 190 gagactttcacggggttctgtttattcagcctgaatcatgagcacaagaatatacagaat 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gagactttcacggggttctgtttattcagcctgaatcatgagcacaagaatatacagaat 303

                                                                       
Query: 250 gttgccaggttaggtgtaattttagcactcagaggcagaggaaggcaaacctgagtttgg 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gttgccaggttaggtgtaattttagcactcagaggcagaggaaggcaaacctgagtttgg 243

                                                                   
Query: 310 caccgtccgcccagacctatgtatatagcacgctccaggccagccagggttacata 365
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 242 caccgtccgtccagacctatgtatatagcaagctccaggccagccagggttacata 187


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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