BAC Information

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BAC

Clone NameMSMg01-389O16
Chromosome10 (Build37)
Map Location 105,277,992 - 105,278,243
singlet/doubletsinglet
Overlap geneBC067068
Upstream geneLOC100042383, Tmtc2, EG627573
Downstream geneCcdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389O16.T7 (MSMg01no389_o16.b1)MSMg01-389O16.TJ (MSMg01no389_o16.g1)
ACCAG492057AG492058
length784744
length of high quality
(start - end)
288 (72 - 359)243 (84 - 326)
definitionCHROMAT_FILE: MSMg01no389_o16.b1 PHD_FILE: MSMg01no389_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:40 2005CHROMAT_FILE: MSMg01no389_o16.g1 PHD_FILE: MSMg01no389_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGGTTTCCGCAAACATTGTTTCATGAAGAAGCTAAGTATATT
ACATTTTAGAGCCTGTAATTTATACTGCTTGTGCTGTCAATTACAGGGGC
TGGTTCAGTTTGTACAACAGTTGTTCTGCAAGCATAAGAACTTGATAACT
CACCCCCAGCACCCGTGGAAATGCTGGACATGGCAGTGCACATTCAGAAC
TCCACACTGGGCATGGTGGTCCACCTTCACAGTTCCGTGCTGGGCACGGT
GGTCCACCTTTATATACCTGTAAAGCTTGGGTGCTGGAGATTAAACTGCC
TGATCCGTGAAGTTTGTCCGCCAGCCTGTTTAATCAGTGGTAGGCTCTGA
GTTCAGGAAGAGACCCTGGGGCAACAGTCTAAGTTGGCAAGAGATAGAAA
AGAATTGATTTCAACCTGCGCCCTCCCCCACAGACACACATATACCCACA
GTTACATGCATGGACGCACACACCCCCCCTCACCTTACCATACATATCTG
CCTCCTCACTTCACATATCCTCCTATTATCACCCTCCCCCTCCCAATCCC
CCTTCCTCTGAGTCTCTCCCATCACCAACTCTCACCCTTTTCTATTTTTT
CTCACGACACATCCCGACTTATCCCCCTTCCTCCCCTTTCTCCCCCCCTC
TTCCGACCATTTGCCTCACTTCCCCTACATTCCCCCCCTCTCTTTAACCC
CCCCTCTTTGCCCCCCCCTTCCTTCCCTTCCTTC
NNNNNCCACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACACCAAGTCGGTCTG
GCAGGAGCTGGTCGACCTGCCCCCTGAGAGCGTGCTGGCGGCGCTGAGGG
AGTCGGCGATGGAGGCCGAGCCGCGCGAGGCAGAGGCGGGATCAGGTGAC
TGGCGGGGCGGGCGGGGCGGGGGCTGTCAGCGCGCCCCCTGGTGGAACTC
GGCGGAAGTGTCAGGGACTTGAAGGATGCTGTTACCTAGGAGATGAATTG
GAGGGAGCTGAATAGCGAGGATGGATGTTGTCTTGCGGGGTCCCCTCTGG
GTTCTAATCTGGGTGTTGGTCTAGTTCCACAACTTAAAGTAGTCAACCCG
GGGAAGAGGCGTTCCTTCATTTATTGATTCAACAATTTAGTTTTGAAAAC
ATCTAAAGGCTGTGTGATGATCAATACAAAGTAGAAGTGGACTTGGGGGA
CCAATAAGAGCCAGTTCCTACTCGGCACAAGGTATCGTGGATTAGGATGG
TGATAGTGAAAGCTTTGAGTGCTCCCTAGTTAATTTGAAAACACCCCTTT
AATTCCCCGCACTTGGGAGGCGGAACTCGAGGCAGGCACATTTCTGAACT
CCAGGCCTGCTTGTTTTTTTTCTTACAACCCCAGCCCCGACAAACCAACC
TCCTAATTAACCACATGCACCCCCTGTTTCTTTTCTCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_o16.g1 MSMg01no389_o16.g1 CHROMAT_FILE:
MSMg01no389_o16.g1 PHD_FILE: MSMg01no389_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:40 2005
         (243 letters)



>mm_chr10_105277926_105278568
          Length = 643

 Score =  426 bits (220), Expect = e-124
 Identities = 240/252 (95%), Gaps = 9/252 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacaccaagtcggtctggcaggagctggtcgacctgccccctgagagcgtgctggcggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tacaccaagtcggtctggcaggagctggtcgacctgccccctgagagcgtgctggcggcg 259

                                                                       
Query: 61  ctgagggagtcggcgatggaggccgagccgcgcgaggcagaggcgggatcaggtgact-- 118
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||  
Sbjct: 258 ctgagggagtcggcggtggaggccgagccgcgcgaggcagagacgggatcaggtgactgg 199

                                                                       
Query: 119 -------ggcggggcgggcggggcgggggctgtcagcgcgccccctggtggaactcggcg 171
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cggggcgggcggggcgggcggggcgggggctgtcagcgcgccccctggtggaactcggcg 139

                                                                       
Query: 172 gaagtgtcagggacttgaaggatgctgttacctaggagatgaattggagggagctgaata 231
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gaagtggcagggacttgaaggatgctgttacctaggagatgaattggagggagctgaata 79

                       
Query: 232 gcgaggatggat 243
           ||||||||||||
Sbjct: 78  gcgaggatggat 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)