BAC Information

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BAC

Clone NameMSMg01-390I07
Chromosome10 (Build37)
Map Location 116,575,400 - 116,575,643
singlet/doubletsinglet
Overlap geneFrs2
Upstream genePtprr, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2
Downstream geneYeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390I07.T7 (MSMg01no390_i07.b1)MSMg01-390I07.TJ (MSMg01no390_i07.g1)
ACCAG492510AG492511
length754745
length of high quality
(start - end)
241 (84 - 324)244 (79 - 322)
definitionCHROMAT_FILE: MSMg01no390_i07.b1 PHD_FILE: MSMg01no390_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:27 2005CHROMAT_FILE: MSMg01no390_i07.g1 PHD_FILE: MSMg01no390_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGACAACC
CGCGGAATTCCAGGACAGCTAGCATATAACGGCTTTATATATATGCTCAG
CCCAGGGAGTAGCACTATTAGGAGGTGTGGCCTTGTTGGAATAGGTGTGT
CACTGTGGCTGTGGGTTTTAAGACCCTCTTCCTAGCTGCCTGGAAACCAG
TCTTCTCCTAGCAGCCTTCAGATGAAGATGGAGAACTCTCAGCTCCGTCT
GCACCATGCCTGCCTGGATGCTGCCATGCTCCCACCTTGATGATAATGGA
CTGAACCTCTGAACCTGTAAGCCAGTTTTTTCTTTATGTTGTTTTTATAA
GACTTACCTTGGTCATGGTGTCTGCTCACAGCAGTAGAACCCTAGCTAAG
ACCCAGGGNTATGAAGAGAAACCCTGTATCAAAAACCACACAAACAATAC
TAAAATTTTAGGCAGTCCCTGACCCCAGCCGGTACCTTTTATAATCCCCC
AGAACGGGTGTAAATCAGTGGCATAACGCTAGCTCATCTTGTCATCCGCG
ACTTCGCCCTACCCTCCCCAAGCCCCCCAATATATCCCCCCACCACACCA
TGCCGTTCTCTCACATGGCCCTGCTTACAATCTCAACCCCTCCTCGCGAT
TTTGAACCCCCCTCCCCCACCCCTTTTTTCCCCCCGGCCTTTCCCCCCCC
TTTGTTCTCTCCACCCCCCGCACCTTCTTCGCCTTTCCCCACCCCTCTCC
TCCC
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTGCAAAAAAAGGGGGCACCAAGCATTGCAGGCATA
CATACATGCAAGCAAAACACCCGTACACATAAAACCAAGTAAATAAAACT
AAAAGGTTTGGATAAGCAGAGGAGTTGGCTTATTATATTGATATCATGTT
GCTATCAGGGTGTAATGCTGGTTAGTATTTTTCCTTTGGGCCAGTGAATT
AGTAGAATTTGGGCTCTTAACCAGATTCATCCTTTTTCTTTCTCGGGATT
TCTGTCTCCCACTGTAGCACTGATTGTTTTATCCTTTTGACTAAGATTAT
AGGGCTGTGCCACCTCTACCTTTTATCCTGAGTTAGTGGTAGAAGGACTT
GGGTAATGAACAAGTTAGACCATGAGTCCATCTACTGATGGGTGCAGNAA
GTAGCTCTTGAAGGGCACTAGGTTTCAAGAGCCGTGCTAGTGATTGCATA
TAAAATGAATTCATAGAAAAGAAGTTTTCTTTTTCTTCCCTCCTTCCTCC
CCTCTCCTTCCCCATTTTTTCTTTAAATCGTTTCCTTTTTGTATGTTTTT
TTTTGAGAAATGGCTTCTTTTCCTAACCCTTGACTGCCCCTGGATATCAT
TATGGACGCCCAGTTTGTTTTTTATTTACAAAGACATCCCTCTTGTCCTC
CGTCTCCCTAAGTGCCTGGAATCTAAAGGCCTCGTGCGCTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_i07.g1 MSMg01no390_i07.g1 CHROMAT_FILE:
MSMg01no390_i07.g1 PHD_FILE: MSMg01no390_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:27 2005
         (244 letters)



>mm_chr10_116575131_116575774
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcaccaagcattgcaggcatacatacatgcaagcaaaacacccgtacacataaaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggcaccaagcattgcaggcatacatacatgcaagcaaaacacccgtacacataaaaccaa 454

                                                                       
Query: 61  gtaaataaaactaaaaggtttggataagcagaggagttggcttattatattgatatcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtaaataaaactaaaaggtttggataagcagaggagttggcttattatattgatatcatg 394

                                                                       
Query: 121 ttgctatcagggtgtaatgctggttagtatttttcctttgggccagtgaattagtagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 393 ttgctatcagggtgtaatgctggttagtatttttcctttgggccagtgaattagtagaag 334

                                                                       
Query: 181 ttgggctcttaaccagattcatcctttttctttctcgggatttctgtctcccactgtagc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctgggctcttaaccagattcatcctttttctttctcgggatttctgtctcccactgtagc 274

               
Query: 241 actg 244
           ||||
Sbjct: 273 actg 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)