BAC Information

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BAC

Clone NameMSMg01-391C17
Chromosome10 (Build37)
Map Location 89,649,365 - 89,649,622
singlet/doubletsinglet
Overlap geneAnks1b
Upstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391C17.T7 (MSMg01no391_c17.b1)MSMg01-391C17.TJ (MSMg01no391_c17.g1)
ACCAG493007AG493008
length741835
length of high quality
(start - end)
474 (75 - 548)241 (74 - 314)
definitionCHROMAT_FILE: MSMg01no391_c17.b1 PHD_FILE: MSMg01no391_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:17 2005CHROMAT_FILE: MSMg01no391_c17.g1 PHD_FILE: MSMg01no391_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGGGGCGCTAAACGACTCACTATATTCAGAGGATCCGCGGAATTCCTTG
GGTTAACTTTCATCTTCACCATCAGAATATGTAATTTATTCTTGTTGTTT
CTTTTTTGCACATGACTACTTAACAAACAGATCAACAGCAACCGACCAAC
AAACAATAACCTCCAAGAACAACAACAACAACAACTCTGCCTCTCAAGAT
CCTCCCATTTATATACCCTTTGGAAAGTCCGCAGAATTCCCAATGTCACA
CAAACTATCTGCAGCTGGCAAAATCACAGCCCTGCTAGAGCATGAGGCGA
ATCATAGTCAGCTGCTGTGGACAGTTTGAAGCAGCCCCATATCCCACACC
TAAGATTAACACAGATTCCCGTATTATGTCTGTGGTTTTCAAAGAAACCA
AAAATTTTCAGTACAGTTACATATCAGATAGCCTGCATATCAGGTGTTTA
AATTACAATTCTTATCAGAAGCAAAATTATAGTTGTGAAATAGCAATGAA
ATAATTTTATGGTTGAGGAACTGTGATAAAGTGTTGCGGCATTAGGAAGG
ATGAGAACCATGGTAGTGAGACATTAGGCAATGGAAGAAGACTGCTGTTG
CTTTGAAGCCCCGCCTCACTTAGTGTGGGGCAATGCAACCCAGACCAAGT
CATTTCATGTTTCTGGACCTTGTTTATGTAATTCCTAAAGGGGAAAACTA
TAATTGCATTTGCAGCTTTCCTGTGAAAAGTAAAAATCTTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGGGTTGTGTGGAAGACCCTGACAG
TCAAGAATGCCTGCACAAAGTGGAAAGTGTGTATGTGTGTGTGTGTGATG
CATGTGCAAATCGTTCACACTTGCAGGCCACAGGTTTACTTCAGGCATCT
TCCCCTATTTCCCTCTACCTTGCTTTTTAAGGCAGGGTGTGACACTGAAG
ACATAATTTTCTTCCCTTTCCACCACTTTAATGGTAACAGGCAGCCCATG
TAAATTCACATACATGTTTTTCATTGGTATTTCTGAACAAAGATGGCATG
GAAGTGGTCACATCAATAACCATCTACGGACCTCACTCATCAGTGACACT
GAACACCACGCCAACCCCACGATTTGAGTTCATTGAGAGCACTGAAAGCC
ACCCATCGGTTGAGCTGACCGACTTAACCCCCACCCATTCCGCTTCCCCG
TTTCTTTCACCTCATACCATCATCCCAAACCTACTCTTCCTTGTGAAACA
TGTCCCCTTGCCCCTTTTCATCCTTGTCTACCCCCTACATTTCCTCCTTA
CCCTTCCCCCTTTATCCTCCCTTCTACTTCCTTCCTACTTCCCTTTCCCC
AAACCCTACTTTCCCTCCTTCCCCCTCCCCCCCCTCCCTCTTTCATTCCC
CTCTCCTTTCTTTATACTTCTCCCCCTCCCCCACTCTTCCCTTTATCCCC
ACCTCCAACCTTCTATCTTCCTTACTCCCACCCACTCCTTTTTTCCCCTT
CTACCTCCTCCCTATATATCCACTTTCTTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_c17.g1 MSMg01no391_c17.g1 CHROMAT_FILE:
MSMg01no391_c17.g1 PHD_FILE: MSMg01no391_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:18 2005
         (241 letters)



>mm_chr10_89649112_89649753
          Length = 642

 Score =  391 bits (202), Expect = e-113
 Identities = 237/258 (91%), Gaps = 17/258 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgggttgtgtggaagaccctgacagtcaagaatgcctgcacaaagtggaaa--gtgtg 58
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||
Sbjct: 511 tctgggttgtgtggaagaccctgacagtcaagaatgcctgcacaaaatggaaagtgtgtg 452

                                                                       
Query: 59  ta--------------tgtgtgtgtgtgtgatgcatgtgcaaatcgttcacacttgcagg 104
           ||              ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 tacgtgtgtgtgtgtgtgtgtgtgtgtgtgatgcatgtgcaaatcgtgcacacttgcagg 392

                                                                       
Query: 105 ccacaggtttacttcaggcatcttcccctatttccctctaccttgctttttaaggcaggg 164
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 391 ccacaggtttacttcaggcatcttcccctatttccctctaccttgctttttaagacaggg 332

                                                                       
Query: 165 tgtgacactgaagacataattttcttccctttc-caccactttaatggtaacaggcagcc 223
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 331 tgtgacactgaagacataatttgcttccctttcacaccactttaatggtaacaggcagcc 272

                             
Query: 224 catgtaaattcacataca 241
           ||||||||||||||||||
Sbjct: 271 catgtaaattcacataca 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space:   146856
Effective search space used:   146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)