BAC Information

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BAC

Clone NameMSMg01-391D12
Chromosome10 (Build37)
Map Location 86,291,890 - 86,292,124
singlet/doubletsinglet
Overlap geneC630002B14Rik
Upstream genePwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1
Downstream geneStab2, 1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391D12.T7 (MSMg01no391_d12.b1)MSMg01-391D12.TJ (MSMg01no391_d12.g1)
ACCAG493044AG493045
length776759
length of high quality
(start - end)
237 (68 - 304)237 (77 - 313)
definitionCHROMAT_FILE: MSMg01no391_d12.b1 PHD_FILE: MSMg01no391_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:21 2005CHROMAT_FILE: MSMg01no391_d12.g1 PHD_FILE: MSMg01no391_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTAAACGACCCACACAGTGCAGCACCACCGCGCCAATCTTACTTG
TTGCCACACAGCATGGCTGAGAAACACCTGAAAAAATGCTCAGCATCCTT
AATCATCAGGGAAATACAAATCAAAACAACCCTGAGATTCCATCTCACAC
CAGTCAGAATGGCTAAGATAAAAATTCAGGTGACATGATATGCTGGCAAG
GATGTGGAGAAAGAGGAACACACCTCCATTGTTGGTGGGATTGTAAGCTT
GTACAACCACTCTGGAAAACAGTCTGGTGGTTCCTCAGAAAATTGGACAT
GGTAATACTGGATGACTCACAATACCTCTCCTGGGCATATATCCAGAAGA
TGTTCCAACTAGTAAGAAAGAAACATGCTTCTCTATGTTTGTAGCAGCCT
TATCCACAACAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAG
GAATGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGC
TATTACAAAGAATGAATTTATGACATTCCTACGCAAATGGTTGGACCTGC
AGGGTATTATCCTGAGTGAGGTACCCCCACATAAAAGAACTCCAATGATA
TGTACTCCCTGATAGCCGGATATTAGCCCCGAAACTAACAATACCCTTTA
TTTTTTTTTCCCATTCTTCCCAACCCCGGAACTTCTTTAAAAATCCCACC
CCCCCCGGCGCGCCCACTTTTCTCCCTCCCTTATTAATGTGAACCCAACC
CCCCCTCTCGTACGGATCCTCCCCCN
NCCGATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTTCCCTGTGCCAGATACTG
AAGACACAACAGGCAAAAAGAGGGCAGCCATTGTGGGAACAGGCCACAGA
AAACCCCGGGACAACCCAATCTTCAGCCTCACCTCTGGCCACCACTCCAT
CCTAGTCCATAAACTAGGCCCCTGGGACCTCACATAAGCAGGAAGGAGCT
CGCTCACTAGAGATAGGGTGCTTATATCTCTGACATTCCTAAGCAGAAAT
GCTTACCTCCACGGTTCTGCTTTAGAAGGTCTGGCCTTAGGGGAGTAATT
AACTCCTTGAGTGGGACTGCTCTTACCAATGAGATCCACGGCCTGATAAA
GGAGACCTCAGAATTCTCCAACCTCTCTACCATACGAGGCCAGATCTTAC
CAACAGTGACAGCTGGCACCTCAGTCGGGGAACTGCAGGAAGCAGGTGGT
ACTTAAGCCACTGGTCTATGACAGACTGACAGCAGTCTGGTGTGAATGAA
ACAGAGCCATCCCTGCAAGAGGGAAGTCTCCAGGGTGTTGACTAGTTCTG
CCGAATCGCCCATCACAATCTTCTTTCTCACCAGTACTTGCCACATTTTC
TTGTTAATTCTCCTCTGCCCCCTTCAGCCTTTCAGTGTGAACCCTGCTGC
CAGCCTCCCGTATACCGCTAACTACCCCTATCGGTCATACTTCCCCCTCC
CACGCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_d12.g1 MSMg01no391_d12.g1 CHROMAT_FILE:
MSMg01no391_d12.g1 PHD_FILE: MSMg01no391_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:21 2005
         (237 letters)



>mm_chr10_86291690_86292326
          Length = 637

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtttccctgtgccagatactgaagacacaacaggcaaaaagagggcagccattgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 caggtttccctgtgccagatactgaagacacaacaggcaaaaagagggcagccattgtgg 376

                                                                       
Query: 61  gaacaggccacagaaaaccccgggacaacccaatcttcagcctcacctctggccaccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaacaggccacagaaaaccccgggacaacccaatcttcagcctcacctctggccaccact 316

                                                                       
Query: 121 ccatcctagtccataaactaggcccctgggacctcacataagcaggaaggagctcgctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ccatcctagtccataaactaggcccctgggacctcacataagcaggaaggagctcgctca 256

                                                                  
Query: 181 ctagagatagggtgcttatatctctgacattcctaagcagaaatgcttacctcca 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctagagatagggtgcttatatctctgacattcctaagcagaaatgcttacctcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)