BAC Information

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BAC

Clone NameMSMg01-391F05
Chromosome10 (Build37)
Map Location 29,250,062 - 29,250,524
singlet/doubletsinglet
Overlap geneRspo3
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
Downstream geneEG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F05.T7 (MSMg01no391_f05.b1)MSMg01-391F05.TJ (MSMg01no391_f05.g1)
ACCAG493126AG493127
length778762
length of high quality
(start - end)
342 (64 - 405)463 (78 - 540)
definitionCHROMAT_FILE: MSMg01no391_f05.b1 PHD_FILE: MSMg01no391_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:30 2005CHROMAT_FILE: MSMg01no391_f05.g1 PHD_FILE: MSMg01no391_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAG
AATTTAAAGTGGCAAAGAATCTGAAACATATTGGCACAGGGAAAATTCCA
ATGGCATATGCTCTCAGATCAAGAATTGACAAGTGAGATCTCATAAAATT
GCAAACCTTTTGTAAGGCAAAGAACATGGTCAATAGGACAAAATGGCAAT
CCACAAATTGGGAAAAGATCTTAACCAACCCTACATCTGATAGAGGGCTA
ATATTCAAAATATGCAAAGAACTAAAGAAGTTAGTTTCCAGAGAAACAAA
TAACCCTATTTAAAATGGGGTACAGAGCTAGACAGAGAATTCTCAACCAA
GGAATCTCAAATGGCTGAGAAACACTTAAAGGGATGTTCAACATCCTTAG
TCATCAGGGAAATGCATATCAAAACAACCCTGAAATTCCACCTCATACCT
ATAATCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGGG
AGGATGTGGAGAAAGGCGAACAATCTTCTATTGCTGATGGGATTGCCAGC
TGGTACAACCACTCTGGAAACCCCTTTGGTGTTTCTCCCGAACCCTGGAA
ACACTTCCAGTCATATCCCCAACAAAATGGTCCCACCCCGTCACCAGCGA
CCCTTGTCCCATCCTAGTCCTCAACCTTTATCCACACCACAACATTTCCA
CAATCCCCTTTTCCTANCATTCAATGTGCCCCTCTAACTCTCCCGGCCCC
TCCTCCTCCCCTTTTCTCTCCCCCCCCC
NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAAAGCCTGGGATAGCCTTT
GTGGTGAGTGGGAATAGGTGAATGACTCAATAGTGAGGAAGAGGAAGAGG
TCAGGAAAATCCCAACTTGAGTGTTTAAAGAGAGATAAGAGAAAAATAGG
GAATTAGAGCATCTGTAATTGTTGTATTTTTGAAAGTTTATGTAATTTCA
GAGTAATGTTTTAGTATTATATATTTAGATAAGGTTCTGAAATGCTTTGC
TATGAAGAATGAAAAGCACTATATATATTTAAATGATTTGGCATTTAACT
AGAAAATATTTTTAGACATTTAGTAACAATCTGGAGATACCTACACAGGT
TCAAATAATCTAAAAGAATCAAATGTCTATTAAAGTCATTTTGTAGTAAT
GTAGCAAAGGTTTTTCTATAACAACTTAAAAATCAAATTTTACTGCATGT
TGTAATTTTGCTTTCTGGAAACCTATTTTGTTGAACATTANAACCCGGGG
AACTCTTTCATTGGAGAAATAGTCCATCTATGTAAAATTTAAATACTGGT
CATATTCATACTGCCTGGTCAAAGGAAAGTTGAAATTACTGTGGAAATTC
CTTTCCCTTGGGTTTTTATCAGGCTCACAACCGGTGGGTTTCCGTCTCTC
TTTTTACGTCCTTAGATCACTTTCTTGCTGGCGCGTAAATACGCATTTTA
ATCCCGTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f05.g1 MSMg01no391_f05.g1 CHROMAT_FILE:
MSMg01no391_f05.g1 PHD_FILE: MSMg01no391_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:30 2005
         (463 letters)



>mm_chr10_29249862_29250724
          Length = 863

 Score =  864 bits (447), Expect = 0.0
 Identities = 459/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaaagcctgggatagcctttgtggtgagtgggaataggtgaatgactcaatagtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaaagcctgggatagcctttgtggtgagtgggaataggtgaatgactcaatagtgag 260

                                                                       
Query: 61  gaagaggaagaggtcaggaaaatcccaacttgagtgtttaaagagagataagagaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagaggaagaggtcaggaaaatcccaacttgagtgtttaaagagagataagagaaaaat 320

                                                                       
Query: 121 agggaattagagcatctgtaattgttgtatttttgaaagtttatgtaatttcagagtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggaattagagcatctgtaattgttgtatttttgaaagtttatgtaatttcagagtaat 380

                                                                       
Query: 181 gttttagtattatatatttagataaggttctgaaatgctttgctatgaagaatgaaaagc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gttttagtattatatatttagataaggttctgaaatgctttgttatgaagaatgaaaagc 440

                                                                       
Query: 241 actatatatatttaaatgatttggcatttaactagaaaatatttttagacatttagtaac 300
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actacacatatttaaatgatttggcatttaactagaaaatatttttagacatttagtaac 500

                                                                       
Query: 301 aatctggagatacctacacaggttcaaataatctaaaagaatcaaatgtctattaaagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatctggagatacctacacaggttcaaataatctaaaagaatcaaatgtctattaaagtc 560

                                                                       
Query: 361 attttgtagtaatgtagcaaaggtttttctataacaacttaaaaatcaaattttactgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttgtagtaatgtagcaaaggtttttctataacaacttaaaaatcaaattttactgca 620

                                                      
Query: 421 tgttgtaattttgctttctggaaacctattttgttgaacatta 463
           |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tgttgtaattttgctttctggaaacctaatttgttgaacatta 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)