BAC Information

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BAC

Clone NameMSMg01-391H18
Chromosome10 (Build37)
Map Location 57,362,119 - 57,362,430
singlet/doubletsinglet
Overlap geneLOC668374, Pkib
Upstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619
Downstream genePpia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391H18.T7 (MSMg01no391_h18.b1)MSMg01-391H18.TJ (MSMg01no391_h18.g1)
ACCAG493246AG493247
length762755
length of high quality
(start - end)
344 (67 - 410)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no391_h18.b1 PHD_FILE: MSMg01no391_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:43 2005CHROMAT_FILE: MSMg01no391_h18.g1 PHD_FILE: MSMg01no391_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATATTCACCACCATCCGCGGAATTCAAAGA
AGTTCCCATAAACTTAGCTATTCAGAAGGATGGTCCAGAATAGCAGAAAC
AAAAGCTCAAATGCAGAAAAGGATAAGACAAAGCAAACACTATTCAGGAC
TCAGAGAAGGTAAGAGTAGAAATAGAGATTGAAGCTGTTGTGAAAGGCTT
TAAATACCAGACTAAAGACTGTGTTTACACATATATACATATATATTATC
ACTAATAAAATGTAGTATTTATTAACATTAGCCACAAATTTAAACACAAA
GTCTTTCCTCATGTCTGATATATATCTGGTATGTATGTGTGTACACACAC
GCACACACACACACACACACACACACACACACACACACACACACATATAT
ATATATATCCCCCACATACCCATATATATATATACCTATATGTGTGTGTT
TGCATGCGCGTATGCCTTATCGTGTGTTGCACAACGCCCATTTTATCCAC
CCCTATATATACCCCATTTATTACCTCCCCCATATAATACACGACCATCC
ACCCCTCCATATTATAATTTACCCCCCCCATGGATGAACGCCTCCTGCAC
TTTGACGGCCCCCCCCATTGGTTCTACCCCCCCCCCCCCCCCCCCCTTTT
TTTTTTCCCCCCCCCCCCCGCCCCCCCCCTTTTTTTTATTCCCCCCCCCC
CTCCCCCCCTTATTCCCCCCCCCCTTGCTATTACTCCCCCCCCCCTCCCT
CCCCCCCCCCCC
GATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCACCTGTCTTGAAGTAGCTGGTGT
TGGTATTTGAGTCACAGTCCTTTTTCTAGCCTCTGTCAGCCACCGTTTTC
CATCCCGGAGGGTATATCCCAAGTAGACTACTTCCATCTGACATAGCTGG
GCTTTTTTAGCAGAGGCCTGGTAACCCAACTCACCCAGTTCTGATAGCAA
TCTCTTGGTCCCCTGCCAGCATTCTCTCTCCATGGTTGCAGCAAGGAGCA
ACATATTGAAGCAGAGTTTTCTGGGAGTTTTCAGCTCGGAAGGAGGCTAA
ATCTCGATGTAGAGCCTCATCAAGAAGGGTGGGGAGTTTTTAAAACCCTG
GGGTAACCGTGTCCAGCTCAATTGTCCCATTTGTCCAGTGCCAGGATCTC
TCCACTCAAAGGCGAATATGGGCTGGCTGGAGGGATGTAACTTCCACGCT
CACATAGCATCTTTTACACCTAGTACTGCGTACCATTTCCGCCCCGAAGG
TAGTGAGCTGAGTAGCTATACCTTTTATGTTTTTCGGCTCATCCCCCGTA
CTCTTTTTTTTCTCCCCTTTCCTCCGCCCTTCCTGGCTCTCCCTTTTCTT
TTCCCTTTCCGGTCCCTCTTTCCCCCCCCCCTTCCCTTTTCCTTCCACCT
TTCTCCCCCCTCCCCCTTCCCTCCCTCCCTTTCTGTCTTTTTCCCCTTCT
TCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_h18.b1 MSMg01no391_h18.b1 CHROMAT_FILE:
MSMg01no391_h18.b1 PHD_FILE: MSMg01no391_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:43 2005
         (344 letters)



>mm_chr10_57361919_57362661
          Length = 743

 Score =  571 bits (295), Expect = e-167
 Identities = 307/313 (98%), Gaps = 5/313 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctattcagaaggatggtccagaatagcagaaacaaaagctcaaatgcagaaaaggataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctattcagaaggatggtccagaatagcagaaacaaaagctcaaatgcagaaaaggataa 260

                                                                       
Query: 61  gacaaagcaaacactattcaggactcagagaaggtaagagtagaaatagagattgaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaagcaaacactattcaggactcagagaaggtaagagtagaaatagagattgaagct 320

                                                                       
Query: 121 gttgtgaaaggctttaaataccagactaaagactgtgtttacacatatatacatatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtgaaaggctttaaataccagactaaagactgtgtttacacatatatacatatatat 380

                                                                       
Query: 181 tatcactaataaaatgtagtatttattaacattagccacaaatttaaacacaaagtcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcactaataaaatgtagtatttattaacattagccacaaatttaaacacaaagtcttt 440

                                                                       
Query: 241 cctcatgtctgatatatatctggtatgtatgtgtgt----acacacacgcacacacacac 296
           ||||| ||||||||||||||||||||||||||||||    |||||||| |||||||||||
Sbjct: 441 cctca-gtctgatatatatctggtatgtatgtgtgtgtgtacacacacacacacacacac 499

                        
Query: 297 acacacacacaca 309
           |||||||||||||
Sbjct: 500 acacacacacaca 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 743
Length adjustment: 9
Effective length of query: 335
Effective length of database: 734
Effective search space:   245890
Effective search space used:   245890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)