BAC Information

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BAC

Clone NameMSMg01-391I18
Chromosome10 (Build37)
Map Location 115,756,195 - 115,756,609
singlet/doubletsinglet
Overlap genePtprb
Upstream geneTmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik
Downstream geneKcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391I18.T7 (MSMg01no391_i18.b1)MSMg01-391I18.TJ (MSMg01no391_i18.g1)
ACCAG493293AG493294
length773805
length of high quality
(start - end)
412 (66 - 477)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no391_i18.b1 PHD_FILE: MSMg01no391_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:48 2005CHROMAT_FILE: MSMg01no391_i18.g1 PHD_FILE: MSMg01no391_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTATACGACTCCTATATTTCGAGGATCCGCGGAATTCCGCA
GATTTTCGCTCTCAAAATGACTTCTACCTCATACTGTCTTCCTGGTATGA
GCTCCAAGCCATCCAAGGCATAGTGCGTTTCTTCCTTTCCCACAGTGGTG
TTGAGCAAGACCAAGGATTCATTGAAGAGCACGATACGATAATGCTCCCA
ATCTCCAGCAGGGGGCGTCCAGTTCACTGTAAAGGACTTCATCCAAATCT
CGTTGTAGGAAACCAGATTCCTCACTTTTTCTGGAACTAAACAAGGGGGC
ATGCGGAGAAGGTATTGAAAACAAAACAAAAACAAAAAATTAAGAATATT
CACTTGCCTTTGTGGGAAGCGATATAGAGAACACAGTGTTTGCTATTGAT
CACATGTGTATTGCCTCCTGATTTCTGAGTAGGNGAGTTCTCTCCCTCTC
CCTTCCCCCGNCCCCCCTCCATTTTGAAGACATGTNGAAATCACTCCCAT
AACGGGGTAAAGTTATGCAGTCTCTTGCCCCGCTGTTCCTAGCGTCCCGT
TGCGACCGCCTGCTTCCCCCGGCTTGTTGGCCCCCCCTGGAAAACATTAA
TGAACTCCTACCCCCCCGGGGGGAAAATGGCAATGGGGAAACCTTTTGAA
AAAAAATGTACGGGGTAACCCGAAACCACCCCCCTTTTTTTTCTTTCCCC
GGGGCAAAAAGAATTCTCTCCCTTTGCCCTCGCCACGTTTTTTTTCTACA
CCCCCCACCCCCTCCCAAAGGGN
AATATAGTGGGAGGCCTGGNGGNCGCCTGGTTCACCAATTTAGGTGAACT
ATAGAATTTCCCGCACCAATCCAACTGAGGAATCTTGAATGGCTGAGAAG
CACCTAAAGAAATGTTCAAGGTCCTTAGTGATCAGAGAAATGCAAATCAA
AATGACCCTGAGATTCCACCTTACACCAATCAGAATGGCTAAGATCAAAA
CCACAGGTGACAATACATGTTGGAGAGGATGTGGAGAAAGAGAAACTCTC
CTCCATTGCTGGTGGGATTGCAAACTGGTGCAACCCACTCTGGAAATCAA
TCTGGAGGGTTCCNCTGNATTATTGGAAATAGATCTACCTGAAGATCCAG
CTATACCATTCTTAGGACTTTTTTATGGTTATTTTATTTATTTACATTTC
AAATGTTGCCCCCCTTCCCAGTCTCCACTCCAAAAACCCCCTATCCCATC
CTTCCTCCACTTAGACTCTATGAGGGTGCTCTAGCATCCCCCTATGCTGG
GGCATTGAGCCTCCACCGGACCAAGGACCTCTCCTCCCACTGATGTCCCC
CAAACGCTTCCTCTGCTACATAATATTAGCTGAACCCTTGCATCCCCTCC
ATGTTGACTCCCCTGCCCCCGTTGGTCTACCCTCTCGTCCTCCCCCCGTT
TCTTTTTTTTTTTCTCACCCGCCTCATTTTTTTCCTTTTCCTTCTCACCC
CCCCCCCCCTCTCTTTTCACGCTTCCTCCCTTTCTATCCCCCCCCATCCC
CTTCCTCCCCTTCTTTTCTTTTCAACTCCCCCCATTCCCTCCTTATTCTT
CCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_i18.b1 MSMg01no391_i18.b1 CHROMAT_FILE:
MSMg01no391_i18.b1 PHD_FILE: MSMg01no391_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:48 2005
         (412 letters)



>mm_chr10_115756007_115756819
          Length = 813

 Score =  717 bits (371), Expect = 0.0
 Identities = 403/415 (97%), Gaps = 3/415 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgacttctacctcatactgtcttcctggtatgagctccaagccatccaaggcatagtg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aatgacttctatctcatactgtcttcctggtatgagctccaagccatccaaggcatagtg 544

                                                                       
Query: 61  cgtttcttcctttcccacagtggtgttgagcaagaccaaggattcattgaagagcacgat 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cgtttcttcctttcccactgtggtgttgagcaagaccaaggattcattgaagagcacgat 484

                                                                       
Query: 121 acgataatgctcccaatctccagcagggggcgtccagttcactgtaaaggacttcatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acgataatgctcccaatctccagcagggggcgtccagttcactgtaaaggacttcatcca 424

                                                                       
Query: 181 aatctcgttgtaggaaaccagattcctcactttttctggaactaaacaagggggcatgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 423 aatctcgttgtaggaaaccagattcctcactttttctggaactaaaccagggggcatgcg 364

                                                                       
Query: 241 gagaaggtattgaaaacaaaacaaaaacaaaaaattaagaatattcacttgccttt-gtg 299
           |||||||||||||||||||||||||||||||||||||||||||||  ||||| ||| |||
Sbjct: 363 gagaaggtattgaaaacaaaacaaaaacaaaaaattaagaatattggcttgctttttgtg 304

                                                                       
Query: 300 ggaagcgatatagagaacacagtgtttgctattgatcacatgtgtattgcctcctgattt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggaagcgatatagagaacacagtgtttgctattgatcacatgtgtattgcctcctgattt 244

                                                                  
Query: 360 ctgagtaggngagttctctccctctcccttcccccgncccccctcc--attttga 412
           ||||||||| |||||||||||||||||||||||||| |||||| ||  |||||||
Sbjct: 243 ctgagtaggtgagttctctccctctcccttcccccgccccccccccccattttga 189


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 813
Length adjustment: 9
Effective length of query: 403
Effective length of database: 804
Effective search space:   324012
Effective search space used:   324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)