BAC Information

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BAC

Clone NameMSMg01-391M06
Chromosome10 (Build37)
Map Location 52,058,842 - 52,059,207
singlet/doubletsinglet
Overlap geneGopc
Upstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1
Downstream geneLOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1, Pln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391M06.T7 (MSMg01no391_m06.b1)MSMg01-391M06.TJ (MSMg01no391_m06.g1)
ACCAG493461AG493462
length752759
length of high quality
(start - end)
368 (42 - 409)59 (254 - 312)
definitionCHROMAT_FILE: MSMg01no391_m06.b1 PHD_FILE: MSMg01no391_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:05 2005CHROMAT_FILE: MSMg01no391_m06.g1 PHD_FILE: MSMg01no391_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTAAGTACCCTTTAAATACAGCAGAGTAAATGATACCATATATTCCCTAA
GGATAACTGCGGAATTTCAGATGACAGAACTTTACTCAGTGAATTGCAAA
AATCTAGGTTGACATTTTTGCTTAATTGAAAATTTTGTTTCAGGTTTTTT
TTTAAAAAGTATCTTGTACATTCCTGATATCTAAATTAATTACTATCTTA
AATCATTATGATGAGTTCACTCTCCAGGTAACTCAACTGCAGTACAAAAT
GGTTTTCTTTAGGCTTTTCTGTATCAATCAATGCTGCTCTAGGAATAGTT
TGGGAAAAGTTACTGTGCATTTGACTTTGGACTTTTAAAGGAAACGCAGA
CAAGTGGAAAACGGCCTGTTTTCAATTATGTTGATCTGTGTGCATGGTAT
TGGAGCATTACACTGTTAATGTTTAGTCCCAAATGTTAATTGTCTGGAAT
CCACGAAAAACAGCTTTATACATTTTTGAGTTGTTCCCAAGCTTTGTCTT
GTGATAGCCAGGAACATTACTATGTCCTGAAATACATTGCGTTCCAACAG
CAGTTGGCTTTAAGCACCTGACTTGCCAGTTATTTAAAAAAGCCGCGGGC
CCCCGGTTAGGCAGATGAAGGAAAAGACACTTTTGGCACAGGGAAGCAAA
TCGGGCTCTTTAATTCAGTAAAATGCTTGCACTCACACAAACCCCCCCGT
GG
NCCCGATGATGTGGGAGGCCTGGNGGNCGCCTGGTTTCTCACCTGAGGNG
AACNANACAAGTTCAACCACCTTCTTGAAAGACAGGGAGTCCTGCTGAAA
ATGGCCTTGCCGTCTGTGATGAGGAAGTCATTGTGTTCACAAGCAAAGCT
CTTCACGTCTCAAGGGGGACCCAAGGCAGGACCCGGTGGAAGGCAGAGCC
ATCCAGAAACGTTGACATGAAGAGTTGCATGGTGTCATTGAAGTATTGTT
TCGCTTGGATTGGGGCTTTACTGCAAAGTCCTTTAATGTGCCACTCTCCA
CAATACGCACAGTTTTTTATTTTCAGCCAGANGGCAAAGGGAGAAGGACN
CNGTTTTTTTCTTCTCTCACGAGAGAAAAGACGTACCTGACAGAGAGACA
AAAAACGCCTACCACCCCCCATTTTTAGGGTGGCCTTTGCAACCTCCTGG
GATAACCGCCGCGCTCATCCAGCACCATGTATCCCCCCATCTCCTTAGGG
GTACCAAGACAAAGGTCATAGCTGGACCCCCGTCCCACTGACGATCCCCC
CCACTCCGCCATCCTTTCCTGTCCCTCGACCAATTTTTTTGCCCTTCCCC
TTACCCTCCCACTTCTCCTTCTCCTTTCCCCCCCCCCACGCCCCCCCCTC
TTTTTTTTCTTTCCATCCCCCCCCCCCCCCCTTTTCTCCCCTCCCCCTTT
TTTCCCCCCCCTCTCCTCCTCTCCCTTTTCTTTCCCTCTCCCTTCCCCCT
TTTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_m06.b1 MSMg01no391_m06.b1 CHROMAT_FILE:
MSMg01no391_m06.b1 PHD_FILE: MSMg01no391_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:05 2005
         (368 letters)



>mm_chr10_52058641_52059407
          Length = 767

 Score =  671 bits (347), Expect = 0.0
 Identities = 362/367 (98%), Gaps = 1/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattctctaagtaccctttaaatacagcagagtaaatgataccatatattccctaagg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggaattctctaagtaccctttaaatacagcagagtaaatgataccatatattccctaagg 508

                                                                       
Query: 62  ataactgcggaatttcagatgacagaactttactcagtgaattgcaaaaatctaggttga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ataactgcggaatttcagatgacagaactttactcagtgaattgcaaaaatctaggttga 448

                                                                       
Query: 122 catttttgcttaattgaaaattttgtttcaggtttttttttaaaaagtatcttgtacatt 181
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 447 catttttgcttaattgaaaattttgtttcagg-ttttttttaaaaagtatcttgtacatt 389

                                                                       
Query: 182 cctgatatctaaattaattactatcttaaatcattatgatgagttcactctccaggtaac 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctgatatctaaattaattactatcttaaatcattatgatgagttcactctccaggtaac 329

                                                                       
Query: 242 tcaactgcagtacaaaatggttttctttaggcttttctgtatcaatcaatgctgctctag 301
           ||||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||||
Sbjct: 328 tcaactgcagtacaaaacggttttctttaggcaatcctgtatcaatcaatgctgctctag 269

                                                                       
Query: 302 gaatagtttgggaaaagttactgtgcatttgactttggacttttaaaggaaacgcagaca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaatagtttgggaaaagttactgtgcatttgactttggacttttaaaggaaacgcagaca 209

                  
Query: 362 agtggaa 368
           |||||||
Sbjct: 208 agtggaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)