BAC Information

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BAC

Clone NameMSMg01-392D03
Chromosome10 (Build37)
Map Location 55,729,778 - 55,730,182
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392D03.T7 (MSMg01no392_d03.b1)MSMg01-392D03.TJ (MSMg01no392_d03.g1)
ACCAG493786AG493787
length764763
length of high quality
(start - end)
546 (48 - 593)402 (74 - 475)
definitionCHROMAT_FILE: MSMg01no392_d03.b1 PHD_FILE: MSMg01no392_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:39 2005CHROMAT_FILE: MSMg01no392_d03.g1 PHD_FILE: MSMg01no392_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATTAATCCCCTAAGCACATGGAATGATCGGTAGCAGTTTTTA
ACTTTTTACTATGTCTGTAGGACCACATATAAGAGTTGTGCATAGGAGTG
TTTGGGAGCCCAGAAGAGGACATCAAATACCCTGGACTTGGAGTTAAAGG
TAGTTCTGAGCTGCTCAACCTGAGTACTAGGAACTGAACTCTCGTTCTTT
GGAAAATCATTTGTGTTCTTAACTGTCAAGCTATCTCTTTAGCCCCATGG
TTGACATTCTGTTTTGTTTTGCTTTGCTTTTCCTTTTATTGGATATTTTC
TTTATTCACATTTCAAATGTTATACCCTTTCCAGGTCTCCTCTGCAGAAA
TCTTCTATCCCATTCACGGTTCCCCTGCCTCTATGAGGGTGCTGCCCCAT
CCACCCACCCATTCCAGCCTTTCTGCCCTGGCATTCCCCTACACTAGGGC
ATCAAACCCCCTCAGATCCAAAAGCTGCTCTTCCCACTGACGTTCAATAA
GGCCATCTTCTGCCACATATGCAGCTGGAGCCATGGGTACTTCCATGTGT
ACTCTTTGGTTGGTGGTCCAGTCCCCAGGAGGGCCTGGGGTCTGGCCAGC
TGACACTGTTGCTCCCCCCTGGGCTTGCAACCCCCTCAGTTCCTTGAGAT
CCTTCTCCACTTCCCCCTCGAGGACCCTGCCTCATGGTTGAACCTCTTAT
ACCACGGCTCCACG
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCAACAGAGGAATCTTGAATGACTGAA
AAGTTCTTAAAGACTTTCAACATCTTTAGGCATCAAGGGAAATGCAAATC
ATTGATTTTTCTACTTTCTGTTCCATTGATCGGCATTGGAATCTGTTTCC
TTCACATTTCCATTTAATTGTTCTTTAAGCCATTTTTGTAAAGCCTTTCT
TTTCTAGCAGAGGCATTGAAGCCTGGGAAATTCCCTGTGTTCTATCTTAG
TCACATCTACAGACTTGAAGGCTTGTCTTGAATTCTCATCTAGTTAAATT
CTTTATATTTTTATTGATCCATGGGTTACATAGGAGCATACTTAGTGTCC
AAAGTAATTTTTATTTCTCAGAAATACTGTAATTGTAATTGTTTTCTAGT
ATAATCTTAGAAAGACCATTCTTGGGGCAGGAGGAATAGCTCAGTGTTTA
ATAGAACTTTCCCTTTCAGAGAATCTGAGTTCCCAGTACCTATATTAGGC
AGCACTAAATCCAATGGAAATCAAACCATATGGGCACCAAGACCCTCTTC
TGGATTCTTAACACCCCTGTACTCACTTGTACATGCTTGTACCCTACAAA
ATAACCCCTTAAAATTATGGTTGGTCCCCTTTTACCCCTCCCCCCCCACT
GGAGATGGGTATCCTCCCCCCTTTCACCCCCCCCTCCCCCCTTCTTCTCC
TTTTTTTTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_d03.g1 MSMg01no392_d03.g1 CHROMAT_FILE:
MSMg01no392_d03.g1 PHD_FILE: MSMg01no392_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:39 2005
         (402 letters)



>mm_chr10_55729499_55730303
          Length = 805

 Score =  729 bits (377), Expect = 0.0
 Identities = 397/405 (98%), Gaps = 3/405 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaacagaggaatcttgaatgactgaaaagttcttaaagactttcaacatctttaggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccaacagaggaatcttgaatgactgaaaagttcttaaagactttcaacatctttaggcat 625

                                                                       
Query: 61  caagggaaatgcaaatcattgatttttctactttctgttccattgatcggcattggaatc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caagggaaatgcaaatcactgatttttctactttctgttccattgatcggcattggaatc 565

                                                                       
Query: 121 tgtttccttcacatttccatttaattgttctttaagccatttttgtaaagcctttctttt 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtttccttcacatttccatttcattgttctttaagccatttttgtaaagcctttctttt 505

                                                                       
Query: 181 ctagcagaggcattgaagcctgggaaattccctgtgttctatcttagtcacatctacaga 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 ctagcagaggcattgaagcctgggaaattccctgtgttctgtcttagtcacatctacaga 445

                                                                       
Query: 241 cttgaaggcttgtcttgaattctcatctagttaaattctttatatttttattgatccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttgaaggcttgtcttgaattctcatctagttaaattctttatatttttattgatccatg 385

                                                                       
Query: 301 ggttacataggagcatact---tagtgtccaaagtaatttttatttctcagaaatactgt 357
           | |||||||||||||||||   |||||||||||||||||||||||||| |||||||||||
Sbjct: 384 gattacataggagcatactatttagtgtccaaagtaatttttatttcttagaaatactgt 325

                                                        
Query: 358 aattgtaattgttttctagtataatcttagaaagaccattcttgg 402
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattgtaattgttttctagtataatcttagaaagaccattcttgg 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 805
Length adjustment: 9
Effective length of query: 393
Effective length of database: 796
Effective search space:   312828
Effective search space used:   312828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)