BAC Information

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BAC

Clone NameMSMg01-392E16
Chromosome10 (Build37)
Map Location 31,054,805 - 31,055,124
singlet/doubletsinglet
Overlap geneTpd52l1
Upstream geneLOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2
Downstream geneLOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E16.T7 (MSMg01no392_e16.b1)MSMg01-392E16.TJ (MSMg01no392_e16.g1)
ACCAG493860AG493861
length784778
length of high quality
(start - end)
425 (50 - 474)320 (77 - 396)
definitionCHROMAT_FILE: MSMg01no392_e16.b1 PHD_FILE: MSMg01no392_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:46 2005CHROMAT_FILE: MSMg01no392_e16.g1 PHD_FILE: MSMg01no392_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGCAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTGTTTAGGAATTTTTCCTCTGTGCCCATATCTTCCAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
CGTATTCTTCTGCACGATAACAACCCGTTGTGCCAGCACCAATTGTTGAA
AACGCTGTCTTTCTTTCCCCGGATGGCTGTACGCTCCCTTGTCGAAAATC
CAGTGACCCTACGTGTGCGCACTTCTTTTCTGGTTTTTCCATCCTATTCC
CTTGGTCCTCCCGTTTGTTTCTATATCCCCACCCCGCCTCCCTCTCCCCC
CCCCTTTTTTTCTCCTCTAGTCCCTCCCCCCCGCCTTGTCGTCCCCCCTC
TCCCGTACTCCCCCCCTCTCCCCCCTTATTTTCCCCTCTCCTCCCCCCTC
TTTTCTTCCGCCCCCCCCCTTCCCCCCCCCCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATATGAGCCATCCTGGTCTCA
AATTCACAGAGATTTACCTGCCTCTGCCTCCTGAGTGTTGGGACTAAAGG
CATGTGCTTCTAGGTCTGGTGAGAATTCAAAATTTTAAAACCCCAAAGCA
ACTAGTACTTTAACACAGTAGGTTATATTAAATTAATCCTACTTGTTCCT
CTTACGAAAGAAACAGTACTACCAGCTCAGGCAGGAGGAAGTAAGAGTTT
GAGGTCAGCTTGGCTTGTGTATAGTGATAGGCCAGTCTGGGGTACATAGT
CTGGGGAAAATAAATATATAAATAAAAAGTATGATCTAAGCAATGTAGAA
CAGCCAACTCCATTCAATAATCGAATTTAATAGGCAAAATGATTTTTATG
CTGAATTACGACGTGCTTTTAATGAGTGAACCGCTTCCAACGCCTCGGTA
CCCTCTCATCACTGTCTTCTTAACTTTACCCCTCCTCCAACCCGCGACTT
GCCCTTGCTCGCCTCAATTGTCCCACCACCCTCCTCTGCTCCCCCCTTTT
CTTCCTACCCATGCTCCCCATCTCTCTTTTTCTCCCTTCCCCTTTCTCCC
ACCATCTGTCCTTTTCCTCTTTCCCCCTAATCTCTCCTTATCCTCCCCCC
CTACTTTCTCTTTCCCCCCTTCCCTCCTCCCCTTTTTTTTCCCTTCCCCT
CCTCCCTTCCCTTTCCTTTTTTCCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e16.g1 MSMg01no392_e16.g1 CHROMAT_FILE:
MSMg01no392_e16.g1 PHD_FILE: MSMg01no392_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:46 2005
         (320 letters)



>mm_chr10_31054634_31055353
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 314/320 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatatgagccatcctggtctcaaattcacagagatttacctgcctctgcctcctgagt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 actatatgaaccatcctggtctcaaattcacagagatttacctgcctctgcctcctgagt 432

                                                                       
Query: 61  gttgggactaaaggcatgtgcttctaggtctggtgagaattcaaaattttaaaaccccaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 431 gttgggactaaaggcatgtgcttcaaggtctggtgagaattcaaaattttaaaaccccaa 372

                                                                       
Query: 121 agcaactagtactttaacacagtaggttatattaaattaatcctacttgttcctcttacg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 371 agcaactagtactttaacacagtaggttatattaaattaatcctacttattcctcttagg 312

                                                                       
Query: 181 aaagaaacagtactaccagctcaggcaggaggaagtaagagtttgaggtcagcttggctt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaagaaaccgtactaccagctcaggcaggaggaagtaagagtttgaggtcagcttggctt 252

                                                                       
Query: 241 gtgtatagtgataggccagtctggggtacatagtctggggaaaataaatatataaataaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtgtagagtgataggccagtctggggtacatagtctggggaaaataaatatataaataaa 192

                               
Query: 301 aagtatgatctaagcaatgt 320
           ||||||||||||||||||||
Sbjct: 191 aagtatgatctaagcaatgt 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)