Query= MSMg01no393_h20.b1 MSMg01no393_h20.b1 CHROMAT_FILE:
MSMg01no393_h20.b1 PHD_FILE: MSMg01no393_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:26 2005
(532 letters)
>mm_chr10_16489548_16490481
Length = 934
Score = 870 bits (450), Expect = 0.0
Identities = 507/532 (95%), Gaps = 14/532 (2%)
Strand = Plus / Minus
Query: 5 gaattctttggatta---caccctattttctgttccatgggcattcctgaggtatgttat 61
|||||||||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 525 gaattctttgga--aaaccaccctattttctgctccatgggcattcctgaggtatgttat 468
Query: 62 cttgactttggtgttgcaatcttctaggaggttcggtgaattgatggatgcagattttat 121
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 467 cttgactttggtgttgcagtcttctaggaggttcagtgaattgatggatgcagattttat 408
Query: 122 ctgacaagagtcaatgcttaaaccaggtcacagt--tctcttcttttttctaaacaccat 179
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 407 ctgacaagagtcaatgcttaaaccatgtcacagttctctcttcttttttctaaacaccat 348
Query: 180 attgctctttcctttaattgatactttgtgccccttgctatgtggttggcttctccctag 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 347 attgctctttcctttaattgatactttgtgccccttgttatgtggttggcttctccctag 288
Query: 240 aaaaaaacagattaatgtatgctaaattttctattcaaagattgtatttaagttgagaaa 299
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 287 -aaaaaacagattaatgtatgctaaattttctattcaaagactgtatttaagttgagaaa 229
Query: 300 tccatttaagaatcattctttttctattattattattattattattattattattattat 359
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 228 tccatttaagaatcattctttttc------tattattattattattattattattattat 175
Query: 360 tattattattaatcattccattcattacatctcaaatgatatcccacttcccgtttaccc 419
|||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct: 174 tattattattaatcattccattcactacatctcaaatgatatccctcttcccggttaccc 115
Query: 420 cctccatcatcccccattccatgatattcctatttcctggttacccctccaccaccaccc 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 114 cctccatcatcccccattccatgatattcctatttcctggttacctctccaccaccaccc 55
Query: 480 ccaccacacatacacacctatcccacaggggcagcagccacaaatggagata 531
|||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ccaccacacaaacacacctatcccacaggggcagcagccacaaatggagata 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 934
Length adjustment: 10
Effective length of query: 522
Effective length of database: 924
Effective search space: 482328
Effective search space used: 482328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_h20.g1 MSMg01no393_h20.g1 CHROMAT_FILE:
MSMg01no393_h20.g1 PHD_FILE: MSMg01no393_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:26 2005
(517 letters)
>mm_chr10_16341210_16342125
Length = 916
Score = 911 bits (471), Expect = 0.0
Identities = 506/520 (97%), Gaps = 7/520 (1%)
Strand = Plus / Plus
Query: 1 aaattctaaaaggtccaccaagatcactaaaattctcaagagtcatcatattgaaaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattctaaaaggtccaccaagatcactaaaattctcaagagtcatcatattgaaaaaga 260
Query: 61 atttaagctctgcaattttctctttctaagtcattaaaatggttacagcaggtttaattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaagctctgcaattttctctttctaagtcattaaaatggttacagcaggtttaattc 320
Query: 121 agttggagactttcaattgcataattacaatcacaccaaaaatcaaggaaaagctcctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttggagactttcaattgcataattacaatcacaccaaaaatcaaggaaaagctcctag 380
Query: 181 gagtttttaaagttattttgcacaatcattattcatcattaagaaaaaaataaccaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtttttaaagttattttgcacaatcattattcatcattaagaaaaaaataaccaaagt 440
Query: 241 ctcttgactttctttctctctactgtaatagcagtttcctaatatttcctagggaactcg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ctcttgactttctttctctctactgtaatagcagtttcctaatgtttcctagggaactcg 500
Query: 301 aaacaagttggctaagacactgcattgctatatt--gaagtcctgatgacctataatttt 358
|||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct: 501 aaacaagttggctaagacactgcattgctatattttg---tcctgatgccctataatttt 557
Query: 359 ttcacatgctacatatatattagtttgctgagaaatacagagggtcagagatggaggtta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcacatgctacatatatattagtttgctgagaaatacagagggtcagagatggaggtta 617
Query: 419 ttgtggtaatttagctcanacactgagctttgaaatggacaaaattgctatgt-ataaat 477
|||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |
Sbjct: 618 ttgtggtaatttagctcaaacactgagctttgaaatggacaaaattgctat-tcataagt 676
Query: 478 ttaaaaattctgccataacggttattaataatattaatgt 517
||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 677 ttaaaaattataccataacagttattaataatattaatgt 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space: 459342
Effective search space used: 459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
