BAC Information

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BAC

Clone NameMSMg01-393M06
Chromosome10 (Build37)
Map Location 97,570,806 - 97,571,314
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
Downstream geneEG667438, EG432494, Atp2b1, Wdr51b, Galnt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393M06.T7 (MSMg01no393_m06.b1)MSMg01-393M06.TJ (MSMg01no393_m06.g1)
ACCAG494982AG494983
length7691,119
length of high quality
(start - end)
526 (35 - 560)---
definitionCHROMAT_FILE: MSMg01no393_m06.b1 PHD_FILE: MSMg01no393_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:51 2005CHROMAT_FILE: MSMg01no393_m06.g1 PHD_FILE: MSMg01no393_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGGG
AATCTCAAAAAACTCGGATTAATCCCAGCACTTGGGAGGCAGAGGCAGGT
GGATTTCTGAGTTCGAGGCCATTCTGGTCTACAGAGTGAGTTCCAGGACA
GCCAGAGATATACAGAGAAACTCTGTCTCAAAAAAACAAGCAAACAACAA
ACAAACAAAAATACAAAAAAAAAAAAAAACCAACCAAACAAAAAAAAACC
TCAAACAAAAAAAATTATCTGCTTGAAACCTGATTTTTCTGTTAGTTGTC
ATTCTGTTATTTTGAAAGAATGTTGTCAGAGGGGTTGGTGAGATAGTTCT
GAGGTAAAGCCACTGGCCACAGCTTAAGGACCCCAGTTTGATCCTCAGGA
CCCACAAGGTGGAAGAGAGGACAAACTTCCCCAAGATGTCCCTGAGATCG
ACAGGAGTGCAGTGGCACATACAGCCATCCCATTACACTATAAATAAACC
TCAATGTATTTTAACAGTAATTGGACAGAAGCAAATATGGCTACACGTTG
AATTTCTCAGACACACCTTCTCTTTTCCTTCAAGATTTACTTCAGGGTGG
CACTGGAATCGCTGGTGGTTTTATTTTTAACATGAAATAGACATTCATAC
TTTTTGATTTAAGCATTTTTTTCAAGAAAGAAAAATTTCTTCTGTAAAGA
GCATGGAAAGGAAAAGTGTCACAGAAAGACTTTTACAAGTGGACATTAAG
GCTTTCCCCTTAAAAAAAA
AAATAATAATACCTCACAACCAAAACTCTCCCTAAATTACCACCCCAACC
CAATACTTAGTTTTCTCTCCGAATTCCATTTTTTTTTTAAACAAAATCCA
CATCCACACCCCTCATCCCACCCACCTACTACTACTTCAATCTCTCAACC
ACTTCTATATCCCATACATTATACCTCTCATACCCTCTATTCACCATTAT
ATCCCCATCTATTCCTCACAACAATACCACCCACCCTCTACCACAACACA
CCATCCAAACATATTAAAATCATAACAAATTCTTTCTTCACCACCGACCT
TCATTACTTTTTTTTATTCTAATTTCCTTTTTTATTCTTCCCTCTCCTTA
ATACTCAACTTCATTATTCTATTTCCTATCCTCTAATAAATTATAAATAA
AAAACAAATAACAACACTGCTCCCTCCTTAATTAATAAATGATCATAATC
GTTTATCAATAACACTAGATTCAATTTTCTATACGTTATAAATTCATCCT
TTTTTAATAATAATCACGAAAACGATTTCTATCCTCGCTAGTTTCTTTAA
TAATACTTATCACCCAGAACATTAAATCCTCACCATTCATAATATCAATA
CTTAATCGTAATAATAATAACATAACACTCAACATAAAACCTACATCGAT
TTTTCCATTACTAAATTATTACCACACGTTTATAAAATCCCCTTACACCC
TACATTCACTCTACTCCTATTTATTAACTCCATCCTTTACCACATCTTCA
CAATTCCACAATACAACTCCTTATCCATTACTTTACTCTCTTTTATCATC
CTCATCTCAACCATATTATAACATCTCCCTATAATACTATCTTATATATT
ATCATTATAAATTTACTCCACTACTTTCAATAATCATATTACTTATAACC
TCAAAATCATAACCAATATCCATTAATACTATCACCACACAATATAATAA
TACATACAAAATTAACATATTATCATACACACACACATATAACCACTACT
CCATCAATTCTATCTACTCTATATTCACGAATATTAAAACTATTTAATAT
ACATTCCATTAATACACATATCTAAATTACTCCACATATCTACCCTACCT
TACTCACTATAATAATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_m06.b1 MSMg01no393_m06.b1 CHROMAT_FILE:
MSMg01no393_m06.b1 PHD_FILE: MSMg01no393_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:51 2005
         (526 letters)



>mm_chr10_97570388_97571314
          Length = 927

 Score =  893 bits (462), Expect = 0.0
 Identities = 497/510 (97%), Gaps = 7/510 (1%)
 Strand = Plus / Minus

                                                                       
Query: 22  caaaaaactcggattaatcccagcacttgggaggcagaggcaggtggatttctgagttcg 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 caaaaaactcggattaatcccagcacttgggaggcagaggcaggtggatttctgagttcg 868

                                                                       
Query: 82  aggccattctggtctacagagtgagttccaggacagccagagatatacagagaaactctg 141
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 867 aggccattctggtctacagagtgagttccaggacagccagaggtatacagagaaactctg 808

                                                                       
Query: 142 tctcaaaaaaacaagcaaacaacaaacaaacaaa-aatacaaaaaaaaaaaaaaac-caa 199
           |||||||||||||||||||||||||||||||||| || ||||||| | |||||||| |||
Sbjct: 807 tctcaaaaaaacaagcaaacaacaaacaaacaaacaa-acaaaaatacaaaaaaacacaa 749

                                                                       
Query: 200 ccaaacaaaaaaaaa---cctcaaac-aaaaaaaattatctgcttgaaacctgatttttc 255
           |||||||||||||||   ||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 748 ccaaacaaaaaaaaaaaccctaaaacaaaaaaaaattatctgcttgaaacctgatttttc 689

                                                                       
Query: 256 tgttagttgtcattctgttattttgaaagaatgttgtcagaggggttggtgagatagttc 315
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgttagttttcattctgttattttgaaagaatgttgtcagaggggttggtgagatagttc 629

                                                                       
Query: 316 tgaggtaaagccactggccacagcttaaggaccccagtttgatcctcaggacccacaagg 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgaggtaaagccactggccacagcttaaggaccccagtttgatcctcaggacccacaagg 569

                                                                       
Query: 376 tggaagagaggacaaacttccccaagatgtccctgagatcgacaggagtgcagtggcaca 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggaagagaggacaaacttccccaagatgtccctgagatcgacaggagtgcagtggcaca 509

                                                                       
Query: 436 tacagccatcccattacactataaataaacctcaatgtattttaacagtaattggacaga 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tacagccatcccattacactataaataaacctcaatgtattttaacagtaattggacaga 449

                                         
Query: 496 agcaaatatggctacacgttgaatttctca 525
           ||||||||||| ||||||||||||||||||
Sbjct: 448 agcaaatatggttacacgttgaatttctca 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space:   473172
Effective search space used:   473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)