BAC Information

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BAC

Clone NameMSMg01-393O09
Chromosome10 (Build37)
Map Location 108,478,494 - 108,479,023
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r12a, Pawr, EG667814, Syt1, EG368203
Downstream geneNav3, LOC100042497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393O09.T7 (MSMg01no393_o09.b1)MSMg01-393O09.TJ (MSMg01no393_o09.g1)
ACCAG495083AG495084
length765762
length of high quality
(start - end)
535 (35 - 569)530 (63 - 592)
definitionCHROMAT_FILE: MSMg01no393_o09.b1 PHD_FILE: MSMg01no393_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:03 2005CHROMAT_FILE: MSMg01no393_o09.g1 PHD_FILE: MSMg01no393_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTTTGT
TTATCTCTGAGCCCCATTTTTAATGTGGTTATTTGATTTTCTGGTGTCCA
CCTTCTTGAGTTCTTTATATGTATGGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATTTGTTGGTGGCCTTTTTATCTTATT
GACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATT
TGTCTATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAAT
TTTTCCCCTGTACCCGTAACTTCGAGGCTTTTCCCTACTTTCTCCTCTAT
AAATTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATT
TGACCTTAGTATAAGGAGATAGAAATGGCTCAATTCACATTCTTCTACAT
GATAATCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTTTTTTTT
TCCCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGG
TGTGTGGGTTCATTTCTGGGGCTTCAATTCTATTCCATTGGTCTACTTGT
CTGTCGCTATACCAGAACCATGCAGTTCTTATTCACAATTGCTCTGTATA
ACCGTTTTAGGTCCCGCATGATGGATTCCCCCCAAGGTTCTTTTATTCCT
GAGAAAAGATTTTGCTCCCCTAAGTTCTTTTTTTATTTCCGAATGATCTT
TGGCAATGTGCCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATTACCAGAGGAGCAGAGAAACATAGCCTCTGACTAT
GCATCAAAGTCTGAAAACTCGTATCCCAGAGAAATGCCATCTTAAAATCG
TGTTAAATTAAAATACTCATGATTTGCCTTTGTGGGTGATCTGGATCATT
GGCAAATAAACAGAACATATAGAAAGCTCATCTATCATCTTCAATTTGAA
GTCAAGCCCCACTAGTTCATGTGTACTTTATCGGGCAAGATTATTGAAGT
AGGATATCATAATTAAAACTCTGCATTTTGTTACTACAGAAGTTGCTTTT
TAAAATCTTGTTAAATCTGGATTAGTCTACTCACTATGACATCTGTCTTG
CTAGCAACACAGAAATATATTAATAATACATTTGAGGCACCCTCAGAGGA
CTTACATCAGTGACTTTGAGGACATCGTACACACAAAGACAGAAATGTCA
TTGAGAGTTATTTTGATTTCACAATATTCTTGATCATCATGCTGTTTATT
AAGATTCATTAAAAGTCCATCATGCTAATTTAACAGAGAAAATCTAATAG
ATTGCTATTGGATAGCTTCCACCAAATTAAATTGGAAAAATTGTAAGAAA
AGTTTTAGCCCCTATCATTAAAATTAAAAAAAAACTTTAATGATATATTA
ATTAACCACCAGCATCCGTGTAATTTATTAAGAATTAAACAACTTAACCT
ACTACAGATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_o09.g1 MSMg01no393_o09.g1 CHROMAT_FILE:
MSMg01no393_o09.g1 PHD_FILE: MSMg01no393_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:04 2005
         (530 letters)



>mm_chr10_108478294_108479223
          Length = 930

 Score =  986 bits (510), Expect = 0.0
 Identities = 525/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattaccagaggagcagagaaacatagcctctgactatgcatcaaagtctgaaaactcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattaccagaggagcagagaaacatagcctctgactatgcatcaaagtctgaaaactcgt 260

                                                                       
Query: 61  atcccagagaaatgccatcttaaaatcgtgttaaattaaaatactcatgatttgcctttg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 atcccagagaaatgccatcttaaaatcgtgttaaattaaaatacccatgatttgcctttg 320

                                                                       
Query: 121 tgggtgatctggatcattggcaaataaacagaacatatagaaagctcatctatcatcttc 180
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tgggtgatctggatcgttggcaaataaacagaacatatcgaaagctcatctatcatcttc 380

                                                                       
Query: 181 aatttgaagtcaagccccactagttcatgtgtactttatcgggcaagattattgaagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttgaagtcaagccccactagttcatgtgtactttatcgggcaagattattgaagtag 440

                                                                       
Query: 241 gatatcataattaaaactctgcattttgttactacagaagttgctttttaaaatcttgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatatcataattaaaactctgcattttgttactacagaagttgctttttaaaatcttgtt 500

                                                                       
Query: 301 aaatctggattagtctactcactatgacatctgtcttgctagcaacacagaaatatatta 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 aaatctggattagtctactcactatgacatctgtcttgctagcaacacggaaatatatta 560

                                                                       
Query: 361 ataatacatttgaggcaccctcagaggacttacatcagtgactttgaggacatcgtacac 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 ataatacatttgaggcaccctcagaggacttgcatcagtgactttgaggacatcgtacac 620

                                                                       
Query: 421 acaaagacagaaatgtcattgagagttattttgatttcacaatattcttgatcatcatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaagacagaaatgtcattgagagttattttgatttcacaatattcttgatcatcatgc 680

                                                             
Query: 481 tgtttattaagattcattaaaagtccatcatgctaatttaacagagaaaa 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtttattaagattcattaaaagtccatcatgctaatttaacagagaaaa 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)