Query= MSMg01no394_h03.b1 MSMg01no394_h03.b1 CHROMAT_FILE:
MSMg01no394_h03.b1 PHD_FILE: MSMg01no394_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:50 2005
(511 letters)
>mm_chr10_25183228_25184138
Length = 911
Score = 951 bits (492), Expect = 0.0
Identities = 504/508 (99%), Gaps = 2/508 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttatt-atcgaacaccaaaactatatcaacttacaattctgtatcaaagaaa 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattcatttattaat-gaacaccaaaactatatcaacttacaattctgtatcaaagaaa 653
Query: 64 agcatgttgctttaatctataaacttttaacattttctatagcacagtttacatgagact 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agcatgttgctttagtctataaacttttaacattttctatagcacagtttacatgagact 593
Query: 124 ttaacagatggtgaaaagtttgacactaacttacattttcataatcacaataaactgaaa 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 592 ttaacagatggtgaaaagtttgacactaacttacatttttataatcacaataaactgaaa 533
Query: 184 tgcttccaactccgtgtcacaactaagagacacaatgctatactaaaaccaagatagcac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgcttccaactccgtgtcacaactaagagacacaatgctatactaaaaccaagatagcac 473
Query: 244 acattttcccacatgacaaattgctacacaaaatacttatagctctgtctaaatcccact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acattttcccacatgacaaattgctacacaaaatacttatagctctgtctaaatcccact 413
Query: 304 ttacaagaggctgaagtaagtacccacggcttctttaaatgcatagtatttagtgtgggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttacaagaggctgaagtaagtacccacggcttctttaaatgcatagtatttagtgtgggg 353
Query: 364 aagcagcacagccaggagtctgacacggtggtaaagcctgggtctggcatacacacaaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aagcagcacagccaggagtctgacacggtggtaaagcctgggtctggcatacacacaaca 293
Query: 424 cagggacacaccccatctcctacagtgggaacctcaagaacttcaaagaaggactgtgaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cagggacacaccccatctcctacagtgggaacctcaagaacttcaaagaaggactgtgaa 233
Query: 484 gctaactttgacagtaacaattttctgg 511
||||||||||||||||||||||||||||
Sbjct: 232 gctaactttgacagtaacaattttctgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_h03.g1 MSMg01no394_h03.g1 CHROMAT_FILE:
MSMg01no394_h03.g1 PHD_FILE: MSMg01no394_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:50 2005
(462 letters)
>mm_chr10_25023923_25024789
Length = 867
Score = 750 bits (388), Expect = 0.0
Identities = 443/464 (95%), Gaps = 5/464 (1%)
Strand = Plus / Plus
Query: 4 acctttggaagagcagtcagtgctcttaaccgctgagccatttctccagccccgttttat 63
|||||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct: 204 acctttgggagagcagtcagtgctcttaaccactgagccatctctccagtcccgttttat 263
Query: 64 tatttttttaaaggctctgtttaaattatttttaatgatgtgcatgtgtctgtttatagg 123
|| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tactttttaaaagactctgtttaaattatttttaatgatgtgcatgtgtctgtttatagg 323
Query: 124 aacgtgcacatgaatgcagttgcctgttgaaggcagaagagtgtgtcggatcccggaagc 183
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 324 aacgtgcacatgaatgcagttgcctgttgaaggcagaagagtgtgtcagatctcggaagc 383
Query: 184 tggagttgtaggcatgggtgctgaaaaatgaacgcaggtcctcttaactgttgcaacatc 243
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 tggagttgtaggcacgggtgctgaaaaatgaacgcaggtcctcctaactgttgcaacatc 443
Query: 244 tctctagccctactattttattgcttaaaataaattcccaggaaggagattgatagataa 303
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctcccgccctactattttattgcttaaaataaattcccaggaaggagattgatagataa 503
Query: 304 aagaccatgactatttatagtttttgaaccatatgaccaatcatccaccataatgttcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagaccatgactatttatagtttttgaaccatatgaccaatcatccaccataatgttcca 563
Query: 364 acagat-----tgctcccttgatgcagttgcccacacttgtaagtaagtccagcactggg 418
|||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 564 acagatgtatatgctcccttgatgcagtcgcccacacttgtaagtaagcccagcactggg 623
Query: 419 aggctgtgatggtttgtatatggttggcccagggagtggcactc 462
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 624 aggctgtgatggtttgtatatggttggcccagggagcggcactc 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 867
Length adjustment: 10
Effective length of query: 452
Effective length of database: 857
Effective search space: 387364
Effective search space used: 387364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
