BAC Information

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BAC

Clone NameMSMg01-394K11
Chromosome10 (Build37)
Map Location 80,684,209 - 80,684,645
singlet/doubletsinglet
Overlap geneAtcay
Upstream geneMum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3
Downstream gene9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394K11.T7 (MSMg01no394_k11.b1)MSMg01-394K11.TJ (MSMg01no394_k11.g1)
ACCAG495659AG495660
length1,055768
length of high quality
(start - end)		---441 (79 - 519)
definitionCHROMAT_FILE: MSMg01no394_k11.b1 PHD_FILE: MSMg01no394_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:06 2005CHROMAT_FILE: MSMg01no394_k11.g1 PHD_FILE: MSMg01no394_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTACAACACGCGCAACAGCGCACGCATGCGCCGGCTCTCAATACCAT
GGCGAAGACGTACGGCGTCTCCTCTAATCTACCTCGCGCCGGCTCCACCC
GTCACAATGCACTGTGCTACAATTATATCGTATACATGTGTTGATTAACT
CGGTCACCATGACACTACCGGCTCGGTTCGGTTGATGTGCGCACGTCGAG
ACTTACCGGCGGCGAGTTTACATCGTTCATAGCCCGAACGTTTAGCCGGT
ATGCGGGATCAGCCGTTTGAGCGTACTCCAATTTAACCCTACTCCGTTGC
CTCTCTTTGTTTTGATCGCCTACATTTCTCGTAGTGCCGATTCCTCAAGA
GTCACGTCGTCTATCATACCTATATACACACACTGAACAATTTTTCTCTT
TCCCTTTTTCCCTCACACTCTTTCCCGTTCTTTAATCCTCCGTTTCCGCC
CTTATTTCCCTACACTTATATACACAATATTAAATAACTTCAAACTACGT
AAATCTCGCATACTGCAATAGGAGAAAAACGCGCGCTGCGTACAATATTA
TCGTACACGGCGTTTCTCATTCCTCTTTTAGATTATCCTCGTATATTCAC
CGTATGGTTACCCTACTTGTCCGTGCCAATACGTTTATGTAGTTGTCCTG
TGCCAGGTACTGTTTACCATCCTTCTCGCTATTTGCGGAACGAATTAATT
CGCGAATCAGTGCGAAACATTCGTTACGCGTTAACAAACGCTATCACTGC
GCGTANCATTGAATAAGCGTTCACGCTTTCTATATCACCTATTTTACCCG
CGTACGATAGAAGCGTTGTGTGAACTAAATTTACCCGCTTATTTTAGCGG
TTGTCACCTTAGAACGTTGATTGTACAATTGTGTGAACGCGGGTGTGCAT
ACTGGTGGTGGACGTTAGGGAATCGGCACATGGAGGTCCGCCGTGTGTAA
TGTATGATCGCATAATATCCGCGCCCTTGGGTACGGTCACGTTTGAACGG
TAGAGAAAAACGTGAATGACGAGAAATGATATACCTTTGACAATACCACA
CTATC

NTTTCAATGAATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCCAGCCTGGNCTTCAGAGTG
AGTTACAGGATAATTAGGTTTACCAAGTGAGACTGTCTCAAAACAAAAAC
AAAGAACAAAAAAAGGAAGTCATTGACTTCAGGCTGGGGAGGGCCAGAGC
TGTGACTCAGTAGGGGTGACTCCGGGGCTCTGCCCCCAGCTTCTTGACAT
CTTGTTCCCAGTGTCTTCTCAGCTAGATAGTTCGAAGTCAGCTTTGGCTA
CGTGAAACCTTGTCCTAACGTGAAATCATACACACTCATTCTCTCTGTGT
GCTTCTGTCTGTCTGTCTCTGTCTGTCTGTCTATGTCTCTCTCTTTCTCT
CTCTCCAATAACCTGTTGGGTTGGACTTTGCCCTGGGAATGGAGCACACA
CCCAGGGCCAGATCCCTGCCTGAAAGGCTGTGCACACAGGGGCCTCTGTG
AGGCTGCAGCTGGACCGGGGTCCTCAGAGGCCCAGTAGGTCAAGCACCAG
GCTGGCATGTGTGCAGCATGACACAAGGGGGTATTTGTCTGACATGGGTG
GGGACACTCACCTAAGCGCCTCCATGGAAAAAGACACCCTCGCCTGCGCA
CAGCTGGATTTTCCTTGTTGAACAAGGAGAACATCGCTCTCGGGCCTAAA
ATAAATAATTCCACTCTTCGCCTTGCTCCCTTGTCACCAATACCTTCCTC
CCATACCTGGGTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_k11.g1 MSMg01no394_k11.g1 CHROMAT_FILE:
MSMg01no394_k11.g1 PHD_FILE: MSMg01no394_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:07 2005
         (441 letters)



>mm_chr10_80684009_80684845
          Length = 837

 Score =  774 bits (400), Expect = 0.0
 Identities = 429/441 (97%), Gaps = 4/441 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccagcctggncttcagagtgagttacaggataattaggtttaccaagtgagactgtct 60
           ||||||||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct: 201 ggccagcctggtcttcagagtgagttacaggatagttagggttacaaagtgagactgtct 260

                                                                       
Query: 61  caaaacaaaaacaaagaacaaaaaaaggaagtcattgacttcaggctggggagggccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaacaaaaacaaagaacaaaaaaaggaagtcattgacttcaggctggggagggccaga 320

                                                                       
Query: 121 gctgtgactcagtaggggtgactccggggctctgcccccagcttcttgacatcttgttcc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gctgtgactcagtaggggtgactccggggctccgcccccagcttcttgacatcttgttcc 380

                                                                       
Query: 181 cagtgtcttctcagctagatagttcgaagtcagctttggctacgtgaaaccttgtcctaa 240
           |||||||||||||||    ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgtcttctcagc----tagtttgaagtcagctttggctacgtgaaaccttgtcctaa 436

                                                                       
Query: 241 cgtgaaatcatacacactcattctctctgtgtgcttctgtctgtctgtctctgtctgtct 300
           | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catgaaatcagacacactcattctctctgtgtgcttctgtctgtctgtctctgtctgtct 496

                                                                       
Query: 301 gtctatgtctctctctttctctctctccaataacctgttgggttggactttgccctggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtctatgtctctctctttctctctctccaataacctgttgggttggactttgccctggga 556

                                                                       
Query: 361 atggagcacacacccagggccagatccctgcctgaaaggctgtgcacacaggggcctctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atggagcacacacccagggccagatccctgcctgaaaggctgtgcacacaggggcctctg 616

                                
Query: 421 tgaggctgcagctggaccggg 441
           |||||||||||||||||||||
Sbjct: 617 tgaggctgcagctggaccggg 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 837
Length adjustment: 9
Effective length of query: 432
Effective length of database: 828
Effective search space:   357696
Effective search space used:   357696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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