BAC Information

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BAC

Clone NameMSMg01-395M06
Chromosome10 (Build37)
Map Location 122,177,569 - 122,177,811
singlet/doubletsinglet
Overlap genePpm1h
Upstream geneBC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
Downstream geneD630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395M06.T7 (MSMg01no395_m06.b1)MSMg01-395M06.TJ (MSMg01no395_m06.g1)
ACCAG496502AG496503
length772793
length of high quality
(start - end)
244 (75 - 318)337 (79 - 415)
definitionCHROMAT_FILE: MSMg01no395_m06.b1 PHD_FILE: MSMg01no395_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:43 2005CHROMAT_FILE: MSMg01no395_m06.g1 PHD_FILE: MSMg01no395_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCAAAATTTGTGGCGGTAAACGAATCCTATTTCGAAAAATCGGCGG
AATTCTCATGTTTACGTGAAAGCCAAATATACCCTTTCTTCTCCAAGCTG
CTTTTGGTCATGGTGTTTCATCACAGTGATAGTAACCCTAACCAGTACAT
TAAGATACCATCAATTTTTTTAAAATTTCACTTTTAGTGTATATACTTAA
AGTAGACAACATGATTTTTAAAACCCTTCTTTTTGTGAGAATTTCACATG
TATGTACTGTATTTACATCATTAAAACATGATCAAAGATGGAGTTCTTCT
GATGTCAGAGTTACAGGTTTTTTTTTATTAGTATAGGGAATATGTGCAGA
CATTCTAAAGAGAAGTTTGCTTAGATCGAAAAGAGCAGACGAATACTGAT
GAGCTGAGATGAAAAACCCGAGATTAAGTTTTAAAAACTGTAAAACAGCA
GTTATCTGGCTCAAAATGAGTCATGGGACCTGGCATGGGTCTTGTCTGCC
TTCCAACAGCCTGTGAACTTGTGATCCAATGACGGCTACTTTTCTTCTCG
CTGTGAATAATCGGCTGACAGGCCCTGACCTTATTCGTGAACATGCCCAC
TCTGGCTGTCGCTCTCCTTATGCCTCAAACCGCGTATCCCTTTGTATATC
TGTTTTTTCTTTTTTCTCACCCTATATAAATCCAGGTTGCCATCTCTTTT
GGTCTTCCCTACTTTTATATCTCCTCTCTCTCTATTTCCTTTTAGTTTCC
CTCTTTTTTATACTATTATTTT
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTCAGTTCTTT
ATATATGTTAGATATTAGTCCCCTATCTTTTAGGTAAAGATCCTTTCCCA
GTCTGTTGGTGGCCTTTTTGTCTTATTGGCGGCGTCCTTTGCCTTACAGA
AGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTCAATCTTACAGCA
CAAGCCATTGCTTGTTCTATTCATAATTTTCCCCGTGCCCATCCATATCT
TTGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGCGTCTCTGGTTT
TATGTGGAGTTCCTTCACCCACCTTTATTTGACCTTAGCACTTGGAGATA
GGAATGTATTATTTCTCATTTCCCCACCGAAACATACTCTTTCTAAAGTA
CCTATCTATGTTAGCTTTCTTTACATTCCCGTTTCTTTACGGTTTTCCTT
TTGTATACTCTCCACAATTTTTCCGTTTCTGACCACATACATTTTCAATT
TCCCCCTCTTCCTTCCTTCTTTTTTTCCTTTTTTCCGTCCCCTTGTTTCC
TGTATCCATTATTTTTCTTTTTGCTCTTCTGCTTTTCTCCCCTTTTCTTT
TTTATTTACCTTCTTTTATTTTTATCTTTATTTTTTCCCTCGTTCCTTCT
CTGTCCTTTTCTTTTTCCCCTTTCTGTTTCTCCCTTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_m06.b1 MSMg01no395_m06.b1 CHROMAT_FILE:
MSMg01no395_m06.b1 PHD_FILE: MSMg01no395_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:43 2005
         (244 letters)



>mm_chr10_122177294_122177937
          Length = 644

 Score =  431 bits (223), Expect = e-125
 Identities = 238/243 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatataccctttcttctccaagctgcttttggtcatggtgtttcatcacagtgatagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaatataccctttcttctccaagctgcttttggtcatggtgtttcatcacagtgatagta 459

                                                                       
Query: 61  accctaaccagtacattaagataccatcaatttttttaaaatttcacttttagtgtatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 accctaaccagtacattaagataccatcaatttttttaaaatttcacttttagtgtatat 399

                                                                       
Query: 121 acttaaagtagacaacatgatttttaaaacccttctttttgtgagaatttcacatgtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct: 398 acttaaagtagacaacatgatttttaaaacccttctttttgtgagaatttcacctataag 339

                                                                       
Query: 181 tactgtatttacatcattaaaacatgatcaaagatggagttcttctgatgtcagagttac 240
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 338 gactgtatttacatcattaaaacatgatcaaagagggagttcttctgatgtcagagttac 279

              
Query: 241 agg 243
           |||
Sbjct: 278 agg 276


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)