BAC Information

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BAC

Clone NameMSMg01-395M12
Chromosome10 (Build37)
Map Location 126,424,211 - 126,424,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLrig3, LOC100043547, LOC668336, Xrcc6bp1, LOC622567
Downstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395M12.T7 (MSMg01no395_m12.b1)MSMg01-395M12.TJ (MSMg01no395_m12.g1)
ACCAG496514AG496515
length825760
length of high quality
(start - end)
186 (124 - 309)228 (91 - 318)
definitionCHROMAT_FILE: MSMg01no395_m12.b1 PHD_FILE: MSMg01no395_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:44 2005CHROMAT_FILE: MSMg01no395_m12.g1 PHD_FILE: MSMg01no395_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTCTATAATTGTGGNCGTTAAACGAANTCACTTTCAAAATGGATCCG
NGGNAATCCTTTTTACANAACATAACTGTGNNGNTGGCAACTGTGACAAC
TAAACCTGACCTTCATAAGGTTAAAAATAATGCCATCCTGTTAAGGCCAG
GCTTCATCTTTTTACAGGCACAGGTTTCTATAGGGAATTACTGCTGTGGG
GGTGCCTAGGGGAGAGGGCGGTGTTAGCATCAGGTGATGCTCGTCTTGTT
GTATCCCAGCACTGTCCATCGAGGCTGAGAGTGGTAAGGCAAGGTATGGT
GGATGGGGAGCCGTTTTCCTCCCTTTTATACCCCCACCACGCCAATTTCT
TTACCTTTTTTTTTTTCTCCCTCTTCCCCCTACTTCTCCCTTTATCCCCT
CCCCCTTTTTTAATCCCCCCCCCTTTCCCCCCTTTTTTTTTTTTTTCCTT
CCCTTTTTCCCCCCCTATTTCACACTCCACACCCCTACTAACCTTATTCT
ATCTCCCCTTTCACCCTCCCTCACCCCTTTTTTTCTCCCCCTCCCCCTTC
TTTCCATTACTCCCTCCCCATTCTTTAATTTCCTTCCTTTTTTTTCACAT
CTTATTTTACCTTTTTCTTTCACCCCCCCCTTTTTTTTCCCCTCCCCTTC
TTCTATCCCCTCCCCCCATTACACTTTCTCCCCCACACTCTTCCCTTTTC
TTTTTCTCTCCTCTCTTTTTTCTCACCTCCAATCCCCTATCGTTTTTTCC
CTTTCTTCCCTAATTATATCTCCCCCCATTCCCCTATCCCCTATAATCCT
CCCCCATTTCTTTTTCATTTATTTT
TTTCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGACAAAAACAATTCNNANAAGCAGAAGGATTCTATT
ATCTGTTAGCTGACCAAGACTTCAAAAATAAGACCCAAGACAGATGACCT
ACTCCTTAGTAAGTACAAATTGTAGTCAACCAAGCATAGGGAGAAACTTG
CTGCTATACACTTGGCCTGCTCAAACTCTGTTACTATATAATGAAAGACT
TTTTGCTTTGGGGTTACCAGGAGCTTGTGGAGAGAAAGATAGATGAGAAA
TGTCTAGTTAGATATTTGCTGCTTTAGAAGAANCCATAATCCATAATCCA
GCTGGAATTTTCTCTGTGCATTGATTTTATTCTGTTTTTTCTTTTTCTAT
TAGATATTTTCTCCACCCCCATTTCAAATGTTATCCCCTTTCCTAGTTTT
CCCTCTGAAAATCCCCTATCCCCTCCCACTGCTTAACCTGTTTTTTAATA
ATATGCTTCGATGCCCATCGCTCTTATGACACGTATAACTTGTGTCTATG
ACGCATTTTTTCCTTTGTACCCCCATCCTGTTTCACGAGCCCCTCCACGT
ACCATACATTTACCATCTTGCCCCCCCGCCGTCGCACCCCCCAATTTTTT
TTTTTTTGTTAGCCCAAACAGCCCAAATTGTCGTAACCTATTATTATTTT
GTCATTTAATATCCCGTCCTCCCATAGGTCTCTCTCCCCCTTCTTATTTA
CCTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_m12.b1 MSMg01no395_m12.b1 CHROMAT_FILE:
MSMg01no395_m12.b1 PHD_FILE: MSMg01no395_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:44 2005
         (186 letters)



>mm_chr10_126424011_126424596
          Length = 586

 Score =  337 bits (174), Expect = 3e-97
 Identities = 183/186 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaataatgccatcctgttaaggccaggcttcatctttttacaggcacaggtttctatag 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaataatgccatcctggtaaggccaggcttcatctttttacaggcacaggtttctatag 260

                                                                       
Query: 61  ggaattactgctgtgggggtgcctaggggagagggcggtgttagcatcaggtgatgctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaattactgctgtgggggtgcctaggggagagggcggtgttagcatcaggtgatgctcg 320

                                                                       
Query: 121 tcttgttgtatcccagcactgtccatcgaggctgagagtggtaaggcaaggtatggtgga 180
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tcttgtcgtatcccagcactgtccatcgaggctgagagtgggaaggcaaggtatggtgga 380

                 
Query: 181 tgggga 186
           ||||||
Sbjct: 381 tgggga 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)