BAC Information

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BAC

Clone NameMSMg01-395P17
Chromosome10 (Build37)
Map Location 113,347,750 - 113,348,244
singlet/doubletsinglet
Overlap genenone
Upstream gene4921506J03Rik, LOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395P17.T7 (MSMg01no395_p17.b1)MSMg01-395P17.TJ (MSMg01no395_p17.g1)
ACCAG496668AG496669
length785795
length of high quality
(start - end)
513 (43 - 555)528 (74 - 601)
definitionCHROMAT_FILE: MSMg01no395_p17.b1 PHD_FILE: MSMg01no395_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:59 2005CHROMAT_FILE: MSMg01no395_p17.g1 PHD_FILE: MSMg01no395_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGAAATCTTCCTTAGACCATTTTTAGAGACCGAGAGACCTTGGAACAT
TCAGTCCTAAATTGGAACCCTCTATCAAATCTTTCCCCTCGGGATTCAGA
ACCCAACAGAAGAGGCAAAAGAATGGAAGGCTCTGGAGGCAAGGGAGGAC
ATCTAGGAAACTACACATACCACCTCACAGAGAATGTAGGAGCATGCATA
AGGCCAGTGCAAAGAGGGTAGATTCAAGCTCCCATCCTTCAACAAAAGAT
ATCTCCTATTAAAAACCATCTTACCCATCCTTAACTAGAAGCTATCTCCA
ACTGAAAACCGGTTCCCAATGAAAAGTTAATTTTCTCAGAAAGAGTCTCA
CTGGGGACTTATCATTGAATTTCTTTTGTATTGCCCATCTATAACTGGGA
ATAGGGCTTACATTGAAGTGTAGTTTTTCTCCTTGTGTGTTCCCATCTAG
TAGAAAAGGACTCATTCCTGATGATGGCTGAGCAGCATACTGATCTACAC
ATGTAGCAGAATGTCCTCCGGCCGCATTTTATTGCTGTGTTCCCTTTACA
GAGGAGGAGTATTTAGCCTTCCCCTTGTTTTGCGGCCTACCCAGTCTCTG
GGGATTGTGCTTCCCCACAAGGTCGGGAAAAAGTTTCTCCCCTGGCATGG
GGCCTTAAATTTATTCCGCAACTGGCTTTTCCCTTAATTTTTGGGTCCCC
CTCTATCCCCTTTTTTTTCAGTTTTTTAATACCCA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCTCTCCTGTGTGTGACACACGCACA
CACACACACACACACACACACACACACACACACACACACACACACGGGTC
TAATTAACCTTAAAAAGATATGATTAGTTTTAGCCACCTTTTCAAACATC
CTTAGTATATGTATCCCTTCTCCTTTCTTCTTTTTGTGTGTTGCCCCCCA
ATCTCTTTTCCTCAGCTAAGGTTTTCCATTCATTTCCCCCATTTCCTCTT
TCACAGCAACTTTTTATCGCTATCCTCTCTTTTATATTCATGTTCACTGA
CACACAAAATACTCACTTTCTGATTTTCCTAGTATCTGATTTTCCTGGTA
TCTGATGTATATGGCCATCTAAAAACATGGGGTGGCATTTATTAATAATA
GAAGCAATGTGGCATTTGTCTTTCTGGGTCTGAGTTATGTCACTCTCTAC
ATTTTGTAAATCTACCAATTTGCTTGAAAATTTAATGGGTTTACTTTTTT
ATAAGTATATCATATTACATAGNATATATTATCCATATTTTCATTTTCAT
TCACAGCTGCAGAAAATTTACTTTGTTTTCCATTTTCTCTCAATTGGGAA
AAAAGCGGTAGGGAAAACAATTGAGCAGGGATTTATGGGAGGGGGATATT
GAAGCTTTTGGGAAAGAAAATAAAAACCACTTCCCCCCTTTCCCTCCTGA
TTTCCTTCCCTTTTATCTCTCCTTCGTGTCCCTTACTTATCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_p17.g1 MSMg01no395_p17.g1 CHROMAT_FILE:
MSMg01no395_p17.g1 PHD_FILE: MSMg01no395_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:00 2005
         (528 letters)



>mm_chr10_113347620_113348546
          Length = 927

 Score =  884 bits (457), Expect = 0.0
 Identities = 486/496 (97%), Gaps = 1/496 (0%)
 Strand = Plus / Minus

                                                                       
Query: 33  acacacacacacacacacacacacacacacacacacacacgggtctaattaaccttaaaa 92
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 acacacacacacacacacacacacacacacacacacacacggttctaattaaccttaaaa 566

                                                                       
Query: 93  agatatgattagttttagccaccttttcaaacatccttagtatatgtatcccttctcctt 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agatatgattagttttagccaccttttcaaacatccttagtatatgtatcccttctcctt 506

                                                                       
Query: 153 tcttctttttgtgtgttgccccccaatctcttttcctcagctaaggttttccattcattt 212
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttctttttgtgtgttg-accccaatctcttttcctcagctaaggttttccattcattt 447

                                                                       
Query: 213 cccccatttcctctttcacagcaactttttatcgctatcctctcttttatattcatgttc 272
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 446 cccccatttcctctttcacagcaactttttatcgctatcccctcttttatattcgtgttc 387

                                                                       
Query: 273 actgacacacaaaatactcactttctgattttcctagtatctgattttcctggtatctga 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actgacacacaaaatactcactttctgattttcctagtatctgattttcctggtatctga 327

                                                                       
Query: 333 tgtatatggccatctaaaaacatggggtggcatttattaataatagaagcaatgtggcat 392
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtatatggtcatctaaaaacatggggtggcatttattaataatagaagcaatgtggcat 267

                                                                       
Query: 393 ttgtctttctgggtctgagttatgtcactctctacattttgtaaatctaccaatttgctt 452
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttgtctttctggatctgagttacgtcactctctacattttgtaaatctaccaatttgctt 207

                                                                       
Query: 453 gaaaatttaatgggtttacttttttataagtatatcatattacatagnatatattatcca 512
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 206 gaaaatttaatggttttacttttttataagtatatcatattacatagtatatattatcca 147

                           
Query: 513 tattttcattttcatt 528
           ||||||||||||||||
Sbjct: 146 tattttcattttcatt 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 927
Length adjustment: 10
Effective length of query: 518
Effective length of database: 917
Effective search space:   475006
Effective search space used:   475006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)