BAC Information

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BAC

Clone NameMSMg01-396E19
Chromosome10 (Build37)
Map Location 75,169,502 - 75,352,171
singlet/doubletdoublet
Overlap geneCabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif
Upstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2
Downstream geneDerl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396E19.T7 (MSMg01no396_e19.b1)MSMg01-396E19.TJ (MSMg01no396_e19.g1)
ACCAG496910AG496911
length755733
length of high quality
(start - end)		457 (38 - 494)245 (67 - 311)
definitionCHROMAT_FILE: MSMg01no396_e19.b1 PHD_FILE: MSMg01no396_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:23 2005CHROMAT_FILE: MSMg01no396_e19.g1 PHD_FILE: MSMg01no396_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,169,502 - 75,169,952)(75,351,931 - 75,352,171)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCA
GCTTTGTCTCAGCTTACACAGCACCTGGCCCAGGCACACTGATAAAACCA
GGGAGTGTACAGCCGCATGGGGCTAGGGCACTGGCGCGAGCACACAGCTA
AGAACTGAGCTTCAGTTCCACCTCTTCCACACAGCTGCCAGTGGGCACTG
CAGACCTTTCCTGGGATCGTAGCTGAGGGTCCCAAGAGGCGGACACTGAC
ACTCAAGAGGGCCTTGGCAGGACAAGGGTGGGTGTTTGGCTAATGTTACT
AAAGCAGAGACTACTACCCTGCTTGCCTGCAGAGGGCCACATGTGGACAA
AGGCGCAGGCAAGATTGCCTTGTCTGCCTCTGTTGCCTTGTCTCAGCCGT
CTGCTCCATCTCTGAGGGGGTCCTGGAACACAAACTGCAGGTGCCCTGGA
CTTGAGACAGAGCAAGAAATCTACAGAAATCCTTTCTGATCGACCTAGCA
AGAGACTGGCACATGAATGGGACCCCTAAGGACCACATACAGCCCACTTT
AGCCCTGAGTCTCAAAAGCTAGGAGTGTATTCTTCTGAAGAAACGGCCTG
TTGGCCCACAGGAAAAAGATCCCCCCCTACAAGTTAGCTGGCGGCAGGGC
CCGAACTTTTCATTTCAAAGGTCTTTTTAAGGTTTGGTTTAAAGGGAACT
TTTCCTTGGAAGAAAATTTGGGGCCAAATAAATTAATTTGATTTTTGAAC
CCACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTCTGCAGTAACTGGCCACTCCATCCTCAGGGT
CAGGGGAGGGGCGGTGGGAGGGACGGTTGTCACCGGGGAGGCAAAGGATG
CTTGTCTGTCTCCCCTGAGATTGTGGCTGATAAGGCAGGCGCCTGCATTG
AGGATCTGAGAAGCACAGTCCAGGGAGTCTGGGGCCCAGGGATGATACAA
GCAGTCTGTCTGTCTGTCTGTCTGGAGGGAGGGAGGGAGGGTGGGGCGGG
CCTGCCATGTTTTTTTCAACAGGAATGCCACAGAAGGCGCTCAGAGTCTG
CAGTTACGTGAACTGAAGTTGAGTGGGAAGCATAGTGGAGCCTATGTCCA
TGGATGCAACTCCATGTCCAGTCTTGCTCTCTTAGACTGGTCAAAGTGGA
CACCTCTGGCCCATTCCATAACTCACTACTTAGAGAGCTATTGTAGTCGG
TTGATCGGTGAATCTCTGGAAATCCCAGTTCTAGGGGCCTAAAGAATTGC
AGTATTAATCACTGTTTGCCTGGTCTGCCCTCAACCTCCTGTGTTCAACT
AGCCCCCGCCTCATCTGCCCCCCCAATATATTTGCAACTCTCTTCCTTTT
CTCTTACGGGTCTATTCAGAGCCCGGTATTTGTAACTCTTTCCCATAGGT
CATTTCCGGTTCTTCCAGGTCTCCCTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_e19.b1 MSMg01no396_e19.b1 CHROMAT_FILE:
MSMg01no396_e19.b1 PHD_FILE: MSMg01no396_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:23 2005
         (457 letters)



>mm_chr10_75169296_75170152
          Length = 857

 Score =  872 bits (451), Expect = 0.0
 Identities = 451/451 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcagctttgtctcagcttacacagcacctggcccaggcacactgataaaaccaggg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagctttgtctcagcttacacagcacctggcccaggcacactgataaaaccaggg 266

                                                                       
Query: 67  agtgtacagccgcatggggctagggcactggcgcgagcacacagctaagaactgagcttc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtgtacagccgcatggggctagggcactggcgcgagcacacagctaagaactgagcttc 326

                                                                       
Query: 127 agttccacctcttccacacagctgccagtgggcactgcagacctttcctgggatcgtagc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agttccacctcttccacacagctgccagtgggcactgcagacctttcctgggatcgtagc 386

                                                                       
Query: 187 tgagggtcccaagaggcggacactgacactcaagagggccttggcaggacaagggtgggt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgagggtcccaagaggcggacactgacactcaagagggccttggcaggacaagggtgggt 446

                                                                       
Query: 247 gtttggctaatgttactaaagcagagactactaccctgcttgcctgcagagggccacatg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtttggctaatgttactaaagcagagactactaccctgcttgcctgcagagggccacatg 506

                                                                       
Query: 307 tggacaaaggcgcaggcaagattgccttgtctgcctctgttgccttgtctcagccgtctg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tggacaaaggcgcaggcaagattgccttgtctgcctctgttgccttgtctcagccgtctg 566

                                                                       
Query: 367 ctccatctctgagggggtcctggaacacaaactgcaggtgccctggacttgagacagagc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctccatctctgagggggtcctggaacacaaactgcaggtgccctggacttgagacagagc 626

                                          
Query: 427 aagaaatctacagaaatcctttctgatcgac 457
           |||||||||||||||||||||||||||||||
Sbjct: 627 aagaaatctacagaaatcctttctgatcgac 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_e19.g1 MSMg01no396_e19.g1 CHROMAT_FILE:
MSMg01no396_e19.g1 PHD_FILE: MSMg01no396_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:23 2005
         (245 letters)



>mm_chr10_75351785_75352429
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctgcagtaactggccactccatcctcagggtcaggggaggggcggtgggagggacgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cctctgcagtaactggccactccatcctcagggtcaggggaggggcggtgggagggacgg 328

                                                                       
Query: 61  ttgtcaccggggaggcaaaggatgcttgtctgtctcccctgagattgtggctgataaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgtcaccggggaggcaaaggatgcttgtctgtctcccctgagattgtggctgataaggc 268

                                                                       
Query: 121 aggcgcctgcattgaggatctgagaagcacagtccagggagtctggggcccagggatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aggcgcctgcattgaggatctgagaagcacagtccagggagtctggggcccagggatgat 208

                                                                       
Query: 181 acaagcagtctgtctgtctgtctgtctggagggagggagggagggtggggcgggcctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 acaagcagtctgtctgtctgtctgtctggagggagggagggagggtggggcgggcctgcc 148

            
Query: 241 a 241
           |
Sbjct: 147 a 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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