BAC Information

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BAC

Clone NameMSMg01-396P20
Chromosome10 (Build37)
Map Location 39,191,628 - 39,362,247
singlet/doubletdoublet
Overlap geneFyn, Traf3ip2
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, LOC629337
Downstream geneLOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396P20.T7 (MSMg01no396_p20.b1)MSMg01-396P20.TJ (MSMg01no396_p20.g1)
ACCAG497434AG497435
length810750
length of high quality
(start - end)		179 (63 - 241)487 (64 - 550)
definitionCHROMAT_FILE: MSMg01no396_p20.b1 PHD_FILE: MSMg01no396_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:16 2005CHROMAT_FILE: MSMg01no396_p20.g1 PHD_FILE: MSMg01no396_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,362,069 - 39,362,247)(39,191,628 - 39,192,114)
sequence
TGTCATCTNNACGACNTCCNANATTCCGAGAATCCGCGGAATTCTTGGAC
TGTCCCCACTACATAGAGAAACCCTGTCTTGAAAAACGAACCAACCAAAA
CAAAATCCAAAACTGTTGAACACGCTAAGCAACCGCTTTATCCTCCAGCA
CCCCCACTTTACTGGTTTTTCACTCCTCTCTGGAATCTACTGCTGCTGCG
TGCCTAGGAGAGGCTTCTGGGAAGGGAGGGAGGGAGGGAGGTATTTACCT
TCCCTTCCCTCTTCTATTCCCTTTCTTTCACTTTTCTTCACCTATTAAAC
CCCCTTTTTTTTTCCACATTTCCCCTTTTCCCCTACCTCCCTTTCTCTCT
CCCTTTTCTTCTCTGTGTCCCTTTTTCATACTTACTATTTTCTGTCCCCC
CCCCCTCCCTCAATACCAACATTTTTTCCAATCTATTCCCCCTTTTTTTC
CCACTTTCCTTCTGTACACACTCCATTTTCATTATCCCCCTTTTTCCCCC
TTCTCCACCTTTTCCTTTACCACTTCCTCTACCATTTCCTATTTTCCCCC
CACATTTCCTCACTCTTTTTTCATTTCATTTTCTAATCTTTGTGTCATTT
TTTCACTTACCTTTTATCCACCTTCCCCTATTCCCCTACCTATCCTCCTA
TTACCCTACCCACCTTTTCCTCCCCATTTATTTATACATTGGCTTCCCAT
TTACATTCACCATTTCTCCACTACCCAATCATATTCCCCTTATTTATCTT
TCTCCCCTAATTCCCACCCACACATTTATTTATTCCTTCCACTTTCTTAT
TCTATATCCG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGCCAGGGGAGGCTTGGTTGCACCATGCTGAAGAGC
GTGGGTGCCTGCATTTCCGGTCATTTCCCCTTCAGAAGCCTGACTGCAGC
CTGGGCTCCTCTGCCAGCCTACTGCATGAGACTGGCAGGCTGCTGGGATG
TGTGGGCCACCGAAACATTCCTGCCCACACAGGCCAGTGCCGCCTTTGTC
CCCAGAATGATTTTTATTGTTTCTTGATGTCTCCCTGCCCTGCGCGCTTG
TTTGCTCCGTTTTGCATAGCACACATTCAGCTTGTTGTTAGATCTTCAGT
CGAGCCTTGCTTATGGCTCTCTGTCCTTGTTCGTCCCTGCCTGCCACATG
TCCAGCCTCCTCCACAGCTGCCAGGAGTGCAGAAATTGGGTTTCCTTAAG
TGTAAGCAACTGGAAGGGTGCCAGAGGAGTGCGGAGGCAATTAGAGGCTT
CGTGCAGCAGTGTGGGTTTGCCACTCTCTCTGGGTGTGTGCCTCTTGCTC
GTTTGCATTTTCCTTTCTGGCATTGCCAGGAAGGCTGCCAGGCGTTGTTG
TTGTTTGGCCGCTGTTTCCCGTACTGTACTGTCCACTTCCTCCTGATTAC
CCTTGTTGCGGACTTCCTTCCCTGCGCCTACGCCATTTATGTGATTCCTT
TTCCCATTCTCCCCCCTCTTCCCTCAATTCCTCCCTACTCCCTATTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_p20.b1 MSMg01no396_p20.b1 CHROMAT_FILE:
MSMg01no396_p20.b1 PHD_FILE: MSMg01no396_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:16 2005
         (179 letters)



>mm_chr10_39361869_39362447
          Length = 579

 Score =  339 bits (175), Expect = 8e-98
 Identities = 178/179 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagagaaaccctgtcttgaaaaacgaaccaaccaaaacaaaatccaaaactgttgaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atagagaaaccctgtcttgaaaaacgaaccaaccaaaacaaaatccaaaactgttgaaca 320

                                                                       
Query: 61  cgctaagcaaccgctttatcctccagcacccccactttactggtttttcactcctctctg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cgctaagcaactgctttatcctccagcacccccactttactggtttttcactcctctctg 260

                                                                      
Query: 121 gaatctactgctgctgcgtgcctaggagaggcttctgggaagggagggagggagggagg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaatctactgctgctgcgtgcctaggagaggcttctgggaagggagggagggagggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no396_p20.g1 MSMg01no396_p20.g1 CHROMAT_FILE:
MSMg01no396_p20.g1 PHD_FILE: MSMg01no396_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:16 2005
         (487 letters)



>mm_chr10_39191428_39192314
          Length = 887

 Score =  895 bits (463), Expect = 0.0
 Identities = 481/487 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgccaggggaggcttggttgcaccatgctgaagagcgtgggtgcctgcatttccggtca 60
           ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccaggggaagcttggttgcaccacgctgaagagcgtgggtgcctgcatttccggtca 260

                                                                       
Query: 61  tttccccttcagaagcctgactgcagcctgggctcctctgccagcctactgcatgagact 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccccttcagaagcctgaatgcagcctgggctcctctgccagcctactgcatgagact 320

                                                                       
Query: 121 ggcaggctgctgggatgtgtgggccaccgaaacattcctgcccacacaggccagtgccgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaggctgctgggatgtgtgggccaccgaaacattcctgcccacacaggccagtgccgc 380

                                                                       
Query: 181 ctttgtccccagaatgatttttattgtttcttgatgtctccctgccctgcgcgcttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgtccccagaatgatttttattgtttcttgatgtctccctgccctgcgcgcttgttt 440

                                                                       
Query: 241 gctccgttttgcatagcacacattcagcttgttgttagatcttcagtcgagccttgctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gctccgttttgcatagcacacattcagcttgttgttagatcttcagttgagccttgctta 500

                                                                       
Query: 301 tggctctctgtccttgttcgtccctgcctgccacatgtccagcctcctccacagctgcca 360
           ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tggatctctgtccttgttcgtccctgcctgccacatgtccagtctcctccacagctgcca 560

                                                                       
Query: 361 ggagtgcagaaattgggtttccttaagtgtaagcaactggaagggtgccagaggagtgcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagtgcagaaattgggtttccttaagtgtaagcaactggaagggtgccagaggagtgcg 620

                                                                       
Query: 421 gaggcaattagaggcttcgtgcagcagtgtgggtttgccactctctctgggtgtgtgcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggcaattagaggcttcgtgcagcagtgtgggtttgccactctctctgggtgtgtgcct 680

                  
Query: 481 cttgctc 487
           |||||||
Sbjct: 681 cttgctc 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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