BAC Information

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BAC

Clone NameMSMg01-397F05
Chromosome10 (Build37)
Map Location 33,897,501 - 34,068,995
singlet/doubletdoublet
Overlap geneDse, Tspyl1, Tspyl4, Nt5dc1
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik
Downstream geneCol10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397F05.T7 (MSMg01no397_f05.b1)MSMg01-397F05.TJ (MSMg01no397_f05.g1)
ACCAG497692AG497693
length773802
length of high quality
(start - end)		299 (67 - 365)240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no397_f05.b1 PHD_FILE: MSMg01no397_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:43 2005CHROMAT_FILE: MSMg01no397_f05.g1 PHD_FILE: MSMg01no397_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,897,501 - 33,897,799)(34,068,756 - 34,068,995)
sequence
CATCCXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCACCCCACCTACGGGAAAACATGGCTGGCCAAATCATGAATCTATCTC
CTCCACCCTTATTCCTTCATCTCTGCAGGTTTAGTGAAATGTGCTAAGGA
AAGGCTCCGTTAAGGGAATCTATGCATGAGCCAAACAACCTACTCCCTGT
TCTCCTTCCAGTGCCGTGTGAAAGCATCAACATCCTTCATCACCCACACT
GAAGGATGTTTATGAGAGTACTGAGTCTCTGTGAAAATCTAGAAGGTTCT
TTGTGATCTTTGGGCCAAGAATAATTGTTCTTTTATAGAGTAACTGACCT
GATTTTTTATTCTCATGGACACTGTAATCTTCAAAACTGAGGAAGCCTAT
CATTTTGTTGCTACCCCAATATAAACTAAGTTTATCTCAGGTCCCACATG
TGATCCACTCGTGGTCATGCTGTGTGACACTTTTTATTGAATTTCACTAT
TCTTTTCCTAAGTCTTTTCCCATCTCTTCTCAGATACTTTCTCCTCAATT
CTCCTCTTCTCCCATCTCCTCTTTATCCCCTTGTCTCCCCTCTTCTTCCC
CTCCCTTCCCCTCTTCGCCTATTTCTTTCTTTCCCAACCTTAATTATCCT
GCTCGTTCCCACTTCCCCTTCTCATTTTTTATCCCCCTCCTATTTGTTAT
TTTTTACTCCTCCCTTCTCCTTTTTTTTTCCCTTTACCCTCTTCTTTCTC
CATCTATATCTATGCTATCTTTC

AATACAGTGGGAGGCCTGGCGGCCGCCTGGTTTCGCAGCTGAGGTGAACT
ATAGAAGGTTTCGAAAAATTCCAGTCCTACATCCTTTGGTGATCAACAGC
AATGTGGAAGTATATGCTGAATAAACCCTGTCCTCTTCAACTGCATGACC
AGGGGCCATGCAGGAGACATTTCCCCTTTGAACTTTGGACAGTTTTTAAA
AATCACCATTCTTAAGAAATACCTTACGTGAGTATATTCTTGTAACAGCT
TTGCCTGTTAGTTTGAACTTTTTGCTCTTACTGTTAGAATTATGCAGTTT
GTGTAGGTGTAACTATGTTCCNCTTGNTGAGAGCTAGCGAGCTCAGGGCC
TAGGTTGTGATCCTCATGGTGCCATATACGCTTGAGTCTTGTTATTTCCG
TTTTCTTAACCCCCCCTCTTGCTTACTTTCCCTCAATCCCTATGCCTAAT
GTTCTTTTTTCCACTTTCCCCTTTACTCCCCAACTATTCTTTTTCCTATA
CATTTCTTTCCTCTCTTCTTTGCTTTTACTTTTCCCACCTTTTTCCCCCT
CTCCTATTACCCCCTTTTACCCTCTCACTTTCACCCTCTTTCCCTATTTT
TTCTAACCCTGTCAACTCCTCCAAACTCAACTTTTCTGACCATCCATTCT
CTTTCCTCTTTCTCATTATTCACTCTCTACATCCTCATTTTCTCCTTTTC
CTATCTTTTTCTATATCATATCTTTTTTACTTTCCCTTTTCCTCTCATCC
TCTCTCTATCCTTCTCACTATTACTATCGTTTTCACCTTCCCTCATTTTC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_f05.b1 MSMg01no397_f05.b1 CHROMAT_FILE:
MSMg01no397_f05.b1 PHD_FILE: MSMg01no397_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:43 2005
         (299 letters)



>mm_chr10_33897301_33897999
          Length = 699

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaacatggctggccaaatcatgaatctatctcctccacccttattccttcatctctgc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gaaaacatggctggccaaatcatgaatctatctcctccacctttattccttcatctctgc 260

                                                                       
Query: 61  aggtttagtgaaatgtgctaaggaaaggctccgttaagggaatctatgcatgagccaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtttagtgaaatgtgctaaggaaaggctccgttaagggaatctatgcatgagccaaac 320

                                                                       
Query: 121 aacctactccctgttctccttccagtgccgtgtgaaagcatcaacatccttcatcaccca 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aacctactccctgttctccttccagtgtcgtgtgaaagcatcaacatccttcatcaccca 380

                                                                       
Query: 181 cactgaaggatgtttatgagagtactgagtctctgtgaaaatctagaaggttctttgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgaaggatgtttatgagagtactgagtctctgtgaaaatctagaaggttctttgtga 440

                                                                      
Query: 241 tctttgggccaagaataattgttcttttatagagtaactgacctgattttttattctca 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctttgggccaagaataattgttcttttatagagtaactgacctgattttttattctca 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no397_f05.g1 MSMg01no397_f05.g1 CHROMAT_FILE:
MSMg01no397_f05.g1 PHD_FILE: MSMg01no397_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:43 2005
         (240 letters)



>mm_chr10_34068486_34069125
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcctacatcctttggtgatcaacagcaatgtggaagtatatgctgaataaaccctgtc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 510 agtcctacatcctttggtgatcaacagcaatgtggaagtataagctgaataaaccctgtc 451

                                                                       
Query: 61  ctcttcaactgcatgaccaggggccatgcaggagacatttcccctttgaactttggacag 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctcttcaagtgcatgaccaggggccatgcaggagacatttcccctttgaactttggacag 391

                                                                       
Query: 121 tttttaaaaatcaccattcttaagaaataccttacgtgagtatattcttgtaacagcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttttaaaaatcaccattcttaagaaataccttacgtgagtatattcttgtaacagcttt 331

                                                                       
Query: 181 gcctgttagtttgaactttttgctcttactgttagaattatgcagtttgtgtaggtgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gcctgttagtttgaactttttgctcttactgttagaattatgcagtttgtgtaggtgtaa 271


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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