BAC Information

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BAC

Clone NameMSMg01-397L24
Chromosome10 (Build37)
Map Location 33,567,158 - 33,567,567
singlet/doubletsinglet
Overlap genenone
Upstream geneTcba1, EG667761, Trdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399
Downstream geneSult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397L24.T7 (MSMg01no397_l24.b1)MSMg01-397L24.TJ (MSMg01no397_l24.g1)
ACCAG498016AG498017
length782833
length of high quality
(start - end)		414 (48 - 461)133 (76 - 208)
definitionCHROMAT_FILE: MSMg01no397_l24.b1 PHD_FILE: MSMg01no397_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:17 2005CHROMAT_FILE: MSMg01no397_l24.g1 PHD_FILE: MSMg01no397_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTTCATTTCCCCAAAATATCCTTTCTTAGCAACACTCTTCA
AAATCCTATATGTTTTTTATTGGTAGAAATAAGGTGCCTTTTGTTTTCTA
CACTAATAGGGTTTTGTTTTCTTTGTGTTCTACCAACTTTTCTCATCTCT
TAGTCCATTCTTCACTCTTTGGTTATCCACACCAACTGCTCTTAGGTAAT
GACTAATCTCAGTTTCCCACAAAAGACATAATTTAACTCCGGGAGAGATC
TGTTCAATGTACAAATCTTTCTTGTTAATGTAAAGGACAGTCAGAATAAT
TTAAGCTTTTAAACAAGTGCTTTCCCTGTGAGTTCAATGTTGCAAACTAA
AGGAATGTTTGTAAAATAATTCATTTTATGAGGGCAGCATAGTGCAGAAT
GTGGAAATCAGTGTAATAGACTACTTATTCAAGGGCACAGTCTAGATAAA
CATTTCTGATTGTGTAACTACTCATGTGGGCACCAAGGTAAAAGTTTTTT
GGTGGCCCATGAGAACAACCAAACCCCCTACCAACTCACCAACCCACCTA
ACCACCCACCAACCCAACCCATTTACAATCCACCCAACCAAACCATCCTA
TCTAACTATCCCATCAATCCAATCTATCCTTCCCTTCCTTTGGGGGGGAA
GAAATCCACCACTTTTCCATCATTCCTCCCCTTCTCTTCTTCTTCCAGGG
GTCTGTGGGGGGGATATATTTCAAATTATTTN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGAACTTTCCAAGACTTTTGTCAT
GAAGGGATGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAACAAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTATATTGATG
GATTTCTGNCNNNNNNCTNNNNCCNGCNNNCCCGCNACGCCCCCCNCNCG
CCCCTCCCCCCTTTCTCCTTTCCCTTCCTCTTTCCCTCCTTCCTCCCTCC
CCCCTTCCCTTCCTCCTCTTTTTTTTTCCCTCTCTTTTCCTTCCCTCTTT
CCTTTTTCCCTTCCCTTTCTTTCCTTCTCCTTCCTCTTTTCTCCTCTCTT
TCTTTTTCCTCTTCCCTTCCCCCCCTCCCCCCTNCTNTNNCCCTCCTTTT
CTCCTTCTCTTCTTCTCTTCCCCCCTCTCCTCTCTCTCCCCTCCTTCCCC
CCCCTCTTTCCTCCTCCCTTCCTCCTCTTCCTTCCTCCCTCCCTCTCCTC
TCCTTCCCTTCCTCCTCTTTCTCTTCTCCCCTCGTGTCTTTGTTTCTTTT
TTTTCCCTCCGCTCATTCCCCCCCGTTTTCTCCCCCCCCTCTCCCCCTTT
TTCTCTTTTTCCTTTGCTCTTTCCTCCTCCTTCCCCCCTCTCTCTCGTTC
TTCCCCTCTCTTCCCCTTCTCCTTCCTCTCTCCCCTCCTCTTTTTTTTTT
TTTCTCTTCCTTCCACCCCCTTCCTTCCTGTTATTTCCCCTCCTCCTCCT
TCTTCTCTTCCATTCTTCACTTACTCCCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_l24.b1 MSMg01no397_l24.b1 CHROMAT_FILE:
MSMg01no397_l24.b1 PHD_FILE: MSMg01no397_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:17 2005
         (414 letters)



>mm_chr10_33566954_33567767
          Length = 814

 Score =  754 bits (390), Expect = 0.0
 Identities = 405/410 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattttcatttccccaaaatatcctttcttagcaacactcttcaaaatcctatat 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaattcattttcaaatgcccaaaatatcctttcttagcaacactcttcaaaatcctatat 555

                                                                       
Query: 65  gttttttattggtagaaataaggtgccttttgttttctacactaatagggttttgttttc 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tttttttattggtagaaataaggtgccttttgttttctacactaatagggttttgttttc 495

                                                                       
Query: 125 tttgtgttctaccaacttttctcatctcttagtccattcttcactctttggttatccaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tttgtgttctaccaacttttctcatctcttagtccattcttcactctttggttatccaca 435

                                                                       
Query: 185 ccaactgctcttaggtaatgactaatctcagtttcccacaaaagacataatttaactccg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 434 ccaactgctcttaggtaatgactaatctcagtttcccacaaaagacataatttaattccg 375

                                                                       
Query: 245 ggagagatctgttcaatgtacaaatctttcttgttaatgtaaaggacagtcagaataatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggagagatctgttcaatgtacaaatctttcttgttaatgtaaaggacagtcagaataatt 315

                                                                       
Query: 305 taagcttttaaacaagtgctttccctgtgagttcaatgttgcaaactaaaggaatgtttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 taagcttttaaacaagtgctttccctgtgagttcaatgttgcaaactaaaggaatgtttg 255

                                                             
Query: 365 taaaataattcattttatgagggcagcatagtgcagaatgtggaaatcag 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taaaataattcattttatgagggcagcatagtgcagaatgtggaaatcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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